Summary
Performance
Cost$0.102
Total elapsed time2m56s
LLM inference time1m40s
Command execution time1m16s
Commands executed35
All details >
Attempt ID vowqrb6e2rr63 Attempt group run-16-09-22-05
Revision fb5c74bd2fee AWS Instance m8i.2xlarge
Start time 2025-09-16T21:37:33.361Z End time 2025-09-16T21:40:30.354Z
Task coreutils-old-version-alpine Environment alpine-3.22.1-amd64-offline
Model gpt-oss-120b-high logo gpt-oss-120b-high OpenRouter slug openai/gpt-oss-120b
Temperature 1 Explicit prompt caching false
User msg after tool call false Max tool calls 200
Total timeout seconds 2400 Single command timeout 900
Cost $0.102 Duration 2m56s
LLM inference time 1m40s Command execution time 1m16s
Final context tokens 33,973 Total output tokens 10,873
Output reasoning tokens 9,632 Messages 73
Assistant messages 36 User messages 1
System messages 1 Commands executed 35
Task
Task: coreutils-old-version-alpine

GNU coreutils 5.0 (from 2003) is a collection of Linux utilities like ls, cp, mv, etc.
Project link: gnu.org/software/coreutils

Task:
Compile and install all coreutils utilities to a specific location.

Difficulties:
The source is very old (2003) and requires heavy patching. On Alpine Linux (with musl) the code requires even more patching.

Environment:
Alpine Linux 3.22.1 on amd64, without internet access.

Execution log
SYSTEM

You are a package-building specialist operating a Alpine Linux 3.22.1 bash shell via one tool: run_terminal_cmd.
The current working directory of every run_terminal_cmd is /home/peter.
Execution rules:
- Always pass non-interactive flags for any command that could prompt (e.g., -y, --yes).
- Don't include any newlines in the command.
- The environment is offline, assume you have all the necessary tools already installed.
If you encounter any errors or issues while doing the user's request, you must fix them and continue the task.
At the end verify you did the user request correctly.

USER

You are given a coreutils v5.0 source code at /home/peter/coreutils.tar.gz. Please compile the coreutils package and install it to /home/peter/result. Create symlinks for all coreutils utilities so they are available under /home/peter/result/. For example: /home/peter/result/uptime should point to the compiled uptime binary.

ASSISTANT
Show reasoning

We need to extract coreutils source, compile, install to /home/peter/result. Coreutils v5.0 is old. Use typical steps: tar -xf coreutils.tar.gz, cd coreutils-?, configure with prefix=/home/peter/result, make, make install. Then need symlinks for all coreutils utilities: after installation, the binaries are likely installed into bin directory (maybe /home/peter/result/bin). We need symlinks under /home/peter/result/ pointing to the binary, maybe to /home/peter/result/bin/. So we need to create symlinks for each entry in bin.

Steps:

1. Extract archive. Determine top-level directory name. Use tar -tzf to list.

2. cd into directory, run ./configure --prefix=/home/peter/result --disable-nls maybe for simplicity. Then make -j$(nproc) and make install.

3. After install, find all files in /home/peter/result/bin (maybe also sbin). For each file, create a symlink in /home/peter/result pointing to bin/. Use a loop.

We'll need to use non-interactive flags, but compilation doesn't need flags. Use 'make -j$(nproc)'.

Potential missing dependencies: building coreutils may require gcc, make, etc. Assume available.

We'll proceed.

compile-bench> tar -tzf /home/peter/coreutils.tar.gz
coreutils-5.0/
coreutils-5.0/config/
coreutils-5.0/config/ChangeLog
coreutils-5.0/config/config.guess
coreutils-5.0/config/config.rpath
coreutils-5.0/config/config.sub
coreutils-5.0/config/depcomp
coreutils-5.0/config/install-sh
coreutils-5.0/config/mdate-sh
coreutils-5.0/config/missing
coreutils-5.0/config/mkinstalldirs
coreutils-5.0/config/texinfo.tex
coreutils-5.0/old/
coreutils-5.0/old/fileutils/
coreutils-5.0/old/fileutils/ChangeLog
coreutils-5.0/old/fileutils/ChangeLog-1997
coreutils-5.0/old/fileutils/NEWS
coreutils-5.0/old/sh-utils/
coreutils-5.0/old/sh-utils/ChangeLog
coreutils-5.0/old/sh-utils/ChangeLog.0
coreutils-5.0/old/sh-utils/NEWS
coreutils-5.0/old/textutils/
coreutils-5.0/old/textutils/ChangeLog
coreutils-5.0/old/textutils/NEWS
coreutils-5.0/po/
coreutils-5.0/po/Makefile.in.in
coreutils-5.0/po/Makevars
coreutils-5.0/po/remove-potcdate.sin
coreutils-5.0/po/quot.sed
coreutils-5.0/po/boldquot.sed
coreutils-5.0/po/[email protected]
coreutils-5.0/po/[email protected]
coreutils-5.0/po/insert-header.sin
coreutils-5.0/po/Rules-quot
coreutils-5.0/po/POTFILES.in
coreutils-5.0/po/coreutils.pot
coreutils-5.0/po/be.po
coreutils-5.0/po/ca.po
coreutils-5.0/po/cs.po
coreutils-5.0/po/da.po
coreutils-5.0/po/de.po
coreutils-5.0/po/el.po
coreutils-5.0/po/es.po
coreutils-5.0/po/et.po
coreutils-5.0/po/fi.po
coreutils-5.0/po/fr.po
coreutils-5.0/po/gl.po
coreutils-5.0/po/hu.po
coreutils-5.0/po/it.po
coreutils-5.0/po/ja.po
coreutils-5.0/po/ko.po
coreutils-5.0/po/lg.po
coreutils-5.0/po/ms.po
coreutils-5.0/po/nb.po
coreutils-5.0/po/nl.po
coreutils-5.0/po/no.po
coreutils-5.0/po/pl.po
coreutils-5.0/po/pt.po
coreutils-5.0/po/pt_BR.po
coreutils-5.0/po/ru.po
coreutils-5.0/po/sk.po
coreutils-5.0/po/sl.po
coreutils-5.0/po/sv.po
coreutils-5.0/po/tr.po
coreutils-5.0/po/zh_CN.po
coreutils-5.0/po/zh_TW.po
coreutils-5.0/po/be.gmo
coreutils-5.0/po/ca.gmo
coreutils-5.0/po/cs.gmo
coreutils-5.0/po/da.gmo
[command output truncated]
coreutils-5.0/tests/uniq/90.I
coreutils-5.0/tests/uniq/90.X
coreutils-5.0/tests/uniq/91.I
coreutils-5.0/tests/uniq/91.X
coreutils-5.0/tests/uniq/92.I
coreutils-5.0/tests/uniq/92.X
coreutils-5.0/tests/uniq/93.I
coreutils-5.0/tests/uniq/93.X
coreutils-5.0/tests/uniq/94.I
coreutils-5.0/tests/uniq/94.X
coreutils-5.0/tests/uniq/101.I
coreutils-5.0/tests/uniq/101.X
coreutils-5.0/tests/uniq/102.I
coreutils-5.0/tests/uniq/102.X
coreutils-5.0/tests/uniq/110.I
coreutils-5.0/tests/uniq/110.X
coreutils-5.0/tests/uniq/111.I
coreutils-5.0/tests/uniq/111.X
coreutils-5.0/tests/uniq/112.I
coreutils-5.0/tests/uniq/112.X
coreutils-5.0/tests/uniq/113.I
coreutils-5.0/tests/uniq/113.X
coreutils-5.0/tests/uniq/114.I
coreutils-5.0/tests/uniq/114.X
coreutils-5.0/tests/uniq/115.I
coreutils-5.0/tests/uniq/115.X
coreutils-5.0/tests/uniq/116.I
coreutils-5.0/tests/uniq/116.X
coreutils-5.0/tests/uniq/117.I
coreutils-5.0/tests/uniq/117.X
coreutils-5.0/tests/uniq/118.I
coreutils-5.0/tests/uniq/118.X
coreutils-5.0/tests/uniq/119.I
coreutils-5.0/tests/uniq/119.X
coreutils-5.0/tests/wc/
coreutils-5.0/tests/wc/Makefile.am
coreutils-5.0/tests/wc/Makefile.in
coreutils-5.0/tests/wc/Test.pm
coreutils-5.0/tests/wc/wc-tests
coreutils-5.0/tests/wc/a0.I
coreutils-5.0/tests/wc/a0.X
coreutils-5.0/tests/wc/a1.I
coreutils-5.0/tests/wc/a1.X
coreutils-5.0/tests/wc/a2.I
coreutils-5.0/tests/wc/a2.X
coreutils-5.0/tests/wc/a3.I
coreutils-5.0/tests/wc/a3.X
coreutils-5.0/tests/wc/a4.I
coreutils-5.0/tests/wc/a4.X
coreutils-5.0/tests/wc/a5.I
coreutils-5.0/tests/wc/a5.X
coreutils-5.0/tests/wc/a6.I
coreutils-5.0/tests/wc/a6.X
coreutils-5.0/tests/wc/a7.I
coreutils-5.0/tests/wc/a7.X
coreutils-5.0/tests/wc/a8.I
coreutils-5.0/tests/wc/a8.X
coreutils-5.0/tests/wc/a9.I
coreutils-5.0/tests/wc/a9.X
coreutils-5.0/tests/wc/b0.I
coreutils-5.0/tests/wc/b0.X
coreutils-5.0/tests/wc/b1.I
coreutils-5.0/tests/wc/b1.X
coreutils-5.0/tests/wc/c0.I
coreutils-5.0/tests/wc/c0.X
coreutils-5.0/tests/wc/c1.I
coreutils-5.0/tests/wc/c1.X
coreutils-5.0/tests/wc/c2.I
coreutils-5.0/tests/wc/c2.X
141 lines
ASSISTANT
Show reasoning

We need to compile coreutils v5.0. Likely need to run ./configure with prefix /home/peter/result, then make, then make install. Then create symlinks for each utility binary in result directory pointing to the installed binary? Actually install will place binaries in prefix/bin. We need symlinks under /home/peter/result/ pointing to the compiled binary (maybe the binary in bin). So after install, we can create symlinks: for each file in /home/peter/result/bin/* (excluding maybe non-executables), create symlink in /home/peter/result/ pointing to bin/. Let's proceed.

First extract source.

compile-bench> mkdir -p /home/peter/build && tar -xzf /home/peter/coreutils.tar.gz -C /home/peter/build
[empty output]
ASSISTANT
Show reasoning

We have extracted coreutils into /home/peter/build/coreutils-5.0. Need to compile. Coreutils uses GNU build system (autoconf). Need to configure with prefix = /home/peter/result. Ensure we have make and gcc installed (offline, but assume they exist). Use ./configure --disable-nls maybe to avoid locale issues, but not needed. We'll run ./configure --disable-nls --prefix=/home/peter/result then make, then make install.

Also need to create symlinks for all utilities directly under result (not in bin?). Default install puts binaries into $prefix/bin and maybe some in $prefix/libexec. We need symlinks for each utility under /home/peter/result/ pointing to the binary location. We'll locate installed binaries after install.

Thus steps:

1. cd /home/peter/build/coreutils-5.0
2. ./configure --disable-nls --prefix=/home/peter/result (non-interactive)
3. make -j$(nproc) (but offline maybe limited)
4. make install
5. After install, create symlink for each binary in result/bin to result/.

Need to find list of binaries. Typically binaries are all files in result/bin. Also some coreutils have 'coreutils' symlink to each command (like 'arch', etc). We'll just link all files in result/bin that are executable and not directories.

Implement: for f in /home/peter/result/bin/*; do ln -s "$f" "/home/peter/result/$(basename $f)"; done

But ensure not to overwrite if already exists (should not exist). Use -sf.

Now run commands.

compile-bench> cd /home/peter/build/coreutils-5.0 && ./configure --disable-nls --prefix=/home/peter/result
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for perl5.003 or newer... no
configure: WARNING:
WARNING: You don't seem to have perl5.003 or newer installed, or you lack
         a usable version of the Perl File::Compare module.  As a result,
         you may be unable to run a few tests or to regenerate certain
         files if you modify the sources from which they are derived.
 
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking whether gcc needs -traditional... no
checking for ranlib... ranlib
checking whether ln -s works... yes
checking for AIX... no
checking for ANSI C header files... no
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking for uname... yes
checking for chroot... yes
checking for gethostid... yes
checking for strerror in -lcposix... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGE_FILES value needed for large files... no
checking for gcc option to accept ANSI C... none needed
checking for function prototypes... yes
checking for ANSI C header files... (cached) no
checking for string.h... (cached) yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for inline... inline
checking for working long double with more range or precision than double... no
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking float.h usability... yes
checking float.h presence... yes
[command output truncated]
configure: WARNING:     ## ------------------------------------ ##
checking for shadow.h... yes
checking for struct spwd.sp_pwdp... no
checking for getspnam... yes
checking for library containing crypt... none required
checking for msgfmt... no
checking for gmsgfmt... :
checking for xgettext... no
checking for msgmerge... no
checking whether NLS is requested... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating lib/Makefile
config.status: creating man/Makefile
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating tests/basename/Makefile
config.status: creating tests/chgrp/Makefile
config.status: creating tests/chmod/Makefile
config.status: creating tests/chown/Makefile
config.status: creating tests/cp/Makefile
config.status: creating tests/cut/Makefile
config.status: creating tests/date/Makefile
config.status: creating tests/dd/Makefile
config.status: creating tests/dircolors/Makefile
config.status: creating tests/du/Makefile
config.status: creating tests/expr/Makefile
config.status: creating tests/factor/Makefile
config.status: creating tests/fmt/Makefile
config.status: creating tests/head/Makefile
config.status: creating tests/install/Makefile
config.status: creating tests/join/Makefile
config.status: creating tests/ln/Makefile
config.status: creating tests/ls-2/Makefile
config.status: creating tests/ls/Makefile
config.status: creating tests/md5sum/Makefile
config.status: creating tests/misc/Makefile
config.status: creating tests/mkdir/Makefile
config.status: creating tests/mv/Makefile
config.status: creating tests/od/Makefile
config.status: creating tests/pr/Makefile
config.status: creating tests/rm/Makefile
config.status: creating tests/rmdir/Makefile
config.status: creating tests/seq/Makefile
config.status: creating tests/sha1sum/Makefile
config.status: creating tests/shred/Makefile
config.status: creating tests/sort/Makefile
config.status: creating tests/stty/Makefile
config.status: creating tests/sum/Makefile
config.status: creating tests/tac/Makefile
config.status: creating tests/tail-2/Makefile
config.status: creating tests/tail/Makefile
config.status: creating tests/test/Makefile
config.status: creating tests/touch/Makefile
config.status: creating tests/tr/Makefile
config.status: creating tests/tsort/Makefile
config.status: creating tests/unexpand/Makefile
config.status: creating tests/uniq/Makefile
config.status: creating tests/wc/Makefile
config.status: creating config.h
config.status: linking ./lib/fnmatch_.h to lib/fnmatch.h
config.status: linking ./lib/ftw_.h to lib/ftw.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
141 lines
ASSISTANT
Show reasoning

The configure succeeded albeit warnings about perl. Next need to make and install to /home/peter/result. Build might be resource-intensive but we try. Use make -j$(nproc) && make install. Use -j? maybe not needed. We'll use make && make install.

compile-bench> cd /home/peter/build/coreutils-5.0 && make -j$(nproc) && make install
make  all-recursive
make[1]: Entering directory '/home/peter/build/coreutils-5.0'
Making all in lib
make[2]: Entering directory '/home/peter/build/coreutils-5.0/lib'
make  all-am
make[3]: Entering directory '/home/peter/build/coreutils-5.0/lib'
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT acl.o -MD -MP -MF ".deps/acl.Tpo" \
  -c -o acl.o `test -f 'acl.c' || echo './'`acl.c; \
then mv ".deps/acl.Tpo" ".deps/acl.Po"; \
else rm -f ".deps/acl.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT getdate.o -MD -MP -MF ".deps/getdate.Tpo" \
  -c -o getdate.o `test -f 'getdate.c' || echo './'`getdate.c; \
then mv ".deps/getdate.Tpo" ".deps/getdate.Po"; \
else rm -f ".deps/getdate.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT posixtm.o -MD -MP -MF ".deps/posixtm.Tpo" \
  -c -o posixtm.o `test -f 'posixtm.c' || echo './'`posixtm.c; \
then mv ".deps/posixtm.Tpo" ".deps/posixtm.Po"; \
else rm -f ".deps/posixtm.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT posixver.o -MD -MP -MF ".deps/posixver.Tpo" \
  -c -o posixver.o `test -f 'posixver.c' || echo './'`posixver.c; \
then mv ".deps/posixver.Tpo" ".deps/posixver.Po"; \
else rm -f ".deps/posixver.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT strftime.o -MD -MP -MF ".deps/strftime.Tpo" \
  -c -o strftime.o `test -f 'strftime.c' || echo './'`strftime.c; \
then mv ".deps/strftime.Tpo" ".deps/strftime.Po"; \
else rm -f ".deps/strftime.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT getopt.o -MD -MP -MF ".deps/getopt.Tpo" \
  -c -o getopt.o `test -f 'getopt.c' || echo './'`getopt.c; \
then mv ".deps/getopt.Tpo" ".deps/getopt.Po"; \
else rm -f ".deps/getopt.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT getopt1.o -MD -MP -MF ".deps/getopt1.Tpo" \
  -c -o getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c; \
then mv ".deps/getopt1.Tpo" ".deps/getopt1.Po"; \
else rm -f ".deps/getopt1.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT hash.o -MD -MP -MF ".deps/hash.Tpo" \
  -c -o hash.o `test -f 'hash.c' || echo './'`hash.c; \
then mv ".deps/hash.Tpo" ".deps/hash.Po"; \
else rm -f ".deps/hash.Tpo"; exit 1; \
fi
In file included from strftime.c:22:
../config.h:1359:15: error: duplicate 'unsigned'
 1359 | #define ino_t unsigned long
      |               ^~~~~~~~
In file included from acl.c:22:
../config.h:1359:15: error: duplicate 'unsigned'
 1359 | #define ino_t unsigned long
      |               ^~~~~~~~
In file included from /usr/include/fortify/stdlib.h:33,
                 from posixver.c:28:
/usr/include/fortify/unistd.h:75:1: error: 'getgroups' undeclared here (not in a function); did you mean 'setgroups'?
   75 | _FORTIFY_FN(getgroups) int getgroups(int __l, gid_t * _FORTIFY_POS0 __s)
      | ^~~~~~~~~~~
In file included from posixver.c:34:
/usr/include/fortify/unistd.h: In function 'getgroups':
/usr/include/fortify/unistd.h:81:16: error: called object '__orig_getgroups' is not a function or function pointer
   81 |         return __orig_getgroups(__l, __s);
      |                ^~~~~~~~~~~~~~~~
/usr/include/fortify/unistd.h:75:1: note: declared here
   75 | _FORTIFY_FN(getgroups) int getgroups(int __l, gid_t * _FORTIFY_POS0 __s)
      | ^~~~~~~~~~~
In file included from posixtm.c:22:
../config.h:1359:15: error: duplicate 'unsigned'
 1359 | #define ino_t unsigned long
      |               ^~~~~~~~
make[3]: *** [Makefile:590: posixver.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: *** [Makefile:590: acl.o] Error 1
In file included from getdate.h:18,
                 from getdate.y:449:
../config.h:1359:15: error: duplicate 'unsigned'
 1359 | #define ino_t unsigned long
      |               ^~~~~~~~
make[3]: *** [Makefile:590: posixtm.o] Error 1
make[3]: *** [Makefile:590: strftime.o] Error 1
make[3]: *** [Makefile:590: getdate.o] Error 1
make[3]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[2]: *** [Makefile:414: all] Error 2
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[1]: *** [Makefile:244: all-recursive] Error 1
make[1]: Leaving directory '/home/peter/build/coreutils-5.0'
make: *** [Makefile:199: all] Error 2
89 lines
ASSISTANT
Show reasoning

The build failed due to config.h defining ino_t causing duplicate definition, and getgroups errors due to fortify headers. Possibly need to disable some features or use older glibc? Since this is coreutils 5.0 (old) may need to pass some configure flags to avoid using certain headers. Could try adding CFLAGS to avoid including config.h's ino_t? Actually config.h defines ino_t as unsigned long, but system already defines ino_t, causing duplicate. Maybe need to add -Dino_t=... but better to use --disable-largefile? Or use --disable-nls already. Could also try adding CFLAGS="-Dino_t=unsigned long"? Not ideal.

Alternative: Use make with "make -C src" maybe only compile utilities? But need all.

Simpler: Use "make -C src" after configure? The error occurs in lib, which is needed.

Maybe we can use "make -j1" to see? Still error.

Maybe need to edit config.h to comment out that define. Let's inspect config.h around that line.

compile-bench> sed -n '1350,1365p' /home/peter/build/coreutils-5.0/config.h
/* Define to `int' if <sys/types.h> doesn't define. */
/* #undef gid_t */

/* Define as `__inline' if that's what the C compiler calls it, or to nothing
   if it is not supported. */
/* #undef inline */

/* Define to `unsigned long' if <sys/types.h> does not define. */
#define ino_t unsigned long

/* Define to widest signed type if <inttypes.h> doesn't define. */
/* #undef intmax_t */

/* Define to rpl_localtime if the replacement function should be used. */
#define localtime rpl_localtime
16 lines
ASSISTANT
Show reasoning

We need to compile coreutils 5.0. There are errors due to config.h defining ino_t which collides with system header. Probably need to avoid redefinition: need to edit config.h to comment out that definition. Also errors about getgroups due to fortify wrappers; maybe need to disable -D_FORTIFY_SOURCE by adding CFLAGS to avoid fortify. Could set CFLAGS=-U_FORTIFY_SOURCE? Or set no fortify includes.

Simplify: Use make with CFLAGS="-U_FORTIFY_SOURCE". But still config.h conflict.

Let's edit config.h to comment out or remove the #define ino_t line.

We'll modify config.h: replace that line with comment.

compile-bench> apply_patch <<'PATCH' *** Begin Patch *** Update File: /home/peter/build/coreutils-5.0/config.h @@ -/* Define to `unsigned long' if <sys/types.h> does not define. */ -#define ino_t unsigned long +/* Define to `unsigned long' if <sys/types.h> does not define. */ +/* Disabled on modern systems where ino_t is already defined. */ +/* #define ino_t unsigned long */ *** End Patch PATCH
bash: apply_patch: command not found
ASSISTANT
Show reasoning

We attempted to use apply_patch, which is not a command. We need to edit using sed or similar. Could use ed or perl to comment out the define. Simpler: use sed to comment out the line. We'll replace the line starting with #define ino_t with a commented version.

Let's run sed -i.

compile-bench> sed -i 's/^#define ino_t/#\/\/ #define ino_t/' /home/peter/build/coreutils-5.0/config.h
[empty output]
ASSISTANT
Show reasoning

We need to compile coreutils 5.0. The failure due to config.h defines ino_t causing duplicate definition. We commented it out via sed. Also there were errors from fortify getgroups. Possibly due to -D_FORTIFY_SOURCE? The error about getgroups being undeclared likely because some macro interfering. Maybe need to disable fortify or include unistd.h earlier. Simpler: we can add -D_FORTIFY_SOURCE=0 to CFLAGS. When configuring, we can set CFLAGS. We'll run make clean then configure again with CFLAGS="-U_FORTIFY_SOURCE". Actually need to disable fortify. Use environment variable CFLAGS="-U_FORTIFY_SOURCE". Also maybe need to include -D__USE_MISC? but likely fortify causing conflict. Let's clean, reconfigure with CFLAGS.

compile-bench> cd /home/peter/build/coreutils-5.0 && make clean
Making clean in tests
make[1]: Entering directory '/home/peter/build/coreutils-5.0/tests'
Making clean in wc
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/wc'
test -z "a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E" || rm -f a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/wc'
Making clean in uniq
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/uniq'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E" || rm -f 1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/uniq'
Making clean in unexpand
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/unexpand'
make[2]: Nothing to be done for 'clean'.
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/unexpand'
Making clean in tsort
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tsort'
make[2]: Nothing to be done for 'clean'.
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/tsort'
Making clean in tr
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tr'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E a.O a.E b.O b.E c.O c.E d.O d.E e.O e.E f.O f.E g.O g.E h.O h.E i.O i.E j.O j.E k.O k.E l.O l.E m.O m.E n.O n.E o.O o.E p.O p.E q.O q.E r.O r.E s.O s.E t.O t.E u.O u.E v.O v.E w.O w.E x.O x.E y.O y.E z.O z.E range-a-a.O range-a-a.E null.O null.E upcase.O upcase.E dncase.O dncase.E rep-cclass.O rep-cclass.E rep-1.O rep-1.E rep-2.O rep-2.E rep-3.O rep-3.
[command output truncated]
'/home/peter/build/coreutils-5.0/po'
Making clean in m4
make[1]: Entering directory '/home/peter/build/coreutils-5.0/m4'
make[1]: Nothing to be done for 'clean'.
make[1]: Leaving directory '/home/peter/build/coreutils-5.0/m4'
Making clean in man
make[1]: Entering directory '/home/peter/build/coreutils-5.0/man'
make[1]: Nothing to be done for 'clean'.
make[1]: Leaving directory '/home/peter/build/coreutils-5.0/man'
Making clean in doc
make[1]: Entering directory '/home/peter/build/coreutils-5.0/doc'
rm -f coreutils.aux coreutils.cp coreutils.cps coreutils.fl coreutils.fn \
  coreutils.ky coreutils.log coreutils.op coreutils.pg \
  coreutils.tmp coreutils.toc coreutils.tp coreutils.tps \
  coreutils.vr coreutils.dvi coreutils.pdf coreutils.ps
rm -f vti.tmp
make[1]: Leaving directory '/home/peter/build/coreutils-5.0/doc'
Making clean in src
make[1]: Entering directory '/home/peter/build/coreutils-5.0/src'
test -z "chgrp chown chmod cp dd dircolors du ginstall link ln dir vdir ls mkdir mkfifo mknod mv readlink rm rmdir shred stat sync touch unlink cat cksum comm csplit cut expand fmt fold head join md5sum nl od paste pr ptx sha1sum sort split sum tac tail tr tsort unexpand uniq wc basename date dirname echo env expr factor false hostname id kill logname pathchk printenv printf pwd seq sleep tee test true tty whoami yes  uname chroot hostid nice pinky users who " || rm -f chgrp chown chmod cp dd dircolors du ginstall link ln dir vdir ls mkdir mkfifo mknod mv readlink rm rmdir shred stat sync touch unlink cat cksum comm csplit cut expand fmt fold head join md5sum nl od paste pr ptx sha1sum sort split sum tac tail tr tsort unexpand uniq wc basename date dirname echo env expr factor false hostname id kill logname pathchk printenv printf pwd seq sleep tee test true tty whoami yes  uname chroot hostid nice pinky users who  > /dev/null 2>&1 || /bin/rm -f chgrp chown chmod cp dd dircolors du ginstall link ln dir vdir ls mkdir mkfifo mknod mv readlink rm rmdir shred stat sync touch unlink cat cksum comm csplit cut expand fmt fold head join md5sum nl od paste pr ptx sha1sum sort split sum tac tail tr tsort unexpand uniq wc basename date dirname echo env expr factor false hostname id kill logname pathchk printenv printf pwd seq sleep tee test true tty whoami yes  uname chroot hostid nice pinky users who 
test -z "groups  nohup su" || rm -f groups  nohup su
rm -f *.o core *.core
make[1]: Leaving directory '/home/peter/build/coreutils-5.0/src'
Making clean in lib
make[1]: Entering directory '/home/peter/build/coreutils-5.0/lib'
test -z "charset.alias ref-add.sed ref-del.sed" || rm -f charset.alias ref-add.sed ref-del.sed
test -z "libfetish.a" || rm -f libfetish.a
rm -f *.o core *.core
make[1]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
Making clean in .
make[1]: Entering directory '/home/peter/build/coreutils-5.0'
make[1]: Nothing to be done for 'clean-am'.
make[1]: Leaving directory '/home/peter/build/coreutils-5.0'
56 lines
ASSISTANT
Show reasoning

Now re-run make.

compile-bench> cd /home/peter/build/coreutils-5.0 && make -j$(nproc) && make install
make  all-recursive
make[1]: Entering directory '/home/peter/build/coreutils-5.0'
Making all in lib
make[2]: Entering directory '/home/peter/build/coreutils-5.0/lib'
make  all-am
make[3]: Entering directory '/home/peter/build/coreutils-5.0/lib'
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT acl.o -MD -MP -MF ".deps/acl.Tpo" \
  -c -o acl.o `test -f 'acl.c' || echo './'`acl.c; \
then mv ".deps/acl.Tpo" ".deps/acl.Po"; \
else rm -f ".deps/acl.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT getdate.o -MD -MP -MF ".deps/getdate.Tpo" \
  -c -o getdate.o `test -f 'getdate.c' || echo './'`getdate.c; \
then mv ".deps/getdate.Tpo" ".deps/getdate.Po"; \
else rm -f ".deps/getdate.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT posixtm.o -MD -MP -MF ".deps/posixtm.Tpo" \
  -c -o posixtm.o `test -f 'posixtm.c' || echo './'`posixtm.c; \
then mv ".deps/posixtm.Tpo" ".deps/posixtm.Po"; \
else rm -f ".deps/posixtm.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT posixver.o -MD -MP -MF ".deps/posixver.Tpo" \
  -c -o posixver.o `test -f 'posixver.c' || echo './'`posixver.c; \
then mv ".deps/posixver.Tpo" ".deps/posixver.Po"; \
else rm -f ".deps/posixver.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT strftime.o -MD -MP -MF ".deps/strftime.Tpo" \
  -c -o strftime.o `test -f 'strftime.c' || echo './'`strftime.c; \
then mv ".deps/strftime.Tpo" ".deps/strftime.Po"; \
else rm -f ".deps/strftime.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT getopt.o -MD -MP -MF ".deps/getopt.Tpo" \
  -c -o getopt.o `test -f 'getopt.c' || echo './'`getopt.c; \
then mv ".deps/getopt.Tpo" ".deps/getopt.Po"; \
else rm -f ".deps/getopt.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT getopt1.o -MD -MP -MF ".deps/getopt1.Tpo" \
  -c -o getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c; \
then mv ".deps/getopt1.Tpo" ".deps/getopt1.Po"; \
else rm -f ".deps/getopt1.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.    -g -O2 -MT hash.o -MD -MP -MF ".deps/hash.Tpo" \
  -c -o hash.o `test -f 'hash.c' || echo './'`hash.c; \
then mv ".deps/hash.Tpo" ".deps/hash.Po"; \
else rm -f ".deps/hash.Tpo"; exit 1; \
fi
In file included from /usr/include/fortify/stdlib.h:33,
                 from posixver.c:28:
/usr/include/fortify/unistd.h:75:1: error: 'getgroups' undeclared here (not in a function); did you mean 'setgroups'?
   75 | _FORTIFY_FN(getgroups) int getgroups(int __l, gid_t * _FORTIFY_POS0 __s)
      | ^~~~~~~~~~~
In file included from posixver.c:34:
/usr/include/fortify/unistd.h: In function 'getgroups':
/usr/include/fortify/unistd.h:81:16: error: called object '__orig_getgroups' is not a function or function pointer
   81 |         return __orig_getgroups(__l, __s);
      |                ^~~~~~~~~~~~~~~~
/usr/include/fortify/unistd.h:75:1: note: declared here
   75 | _FORTIFY_FN(getgroups) int getgroups(int __l, gid_t * _FORTIFY_POS0 __s)
      | ^~~~~~~~~~~
make[3]: *** [Makefile:590: posixver.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[2]: *** [Makefile:414: all] Error 2
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[1]: *** [Makefile:244: all-recursive] Error 1
make[1]: Leaving directory '/home/peter/build/coreutils-5.0'
make: *** [Makefile:199: all] Error 2
68 lines
ASSISTANT
Show reasoning

We still have errors in lib building due to getgroups macro conflict from fortify headers. Possibly need to disable fortify or use -D_FORTIFY_SOURCE=0. Could add CFLAGS to configure. Use ./configure CFLAGS="-U_FORTIFY_SOURCE" maybe. Or set CPPFLAGS to -D_FORTIFY_SOURCE=0. Simpler: set environment variable CFLAGS="-U_FORTIFY_SOURCE". Let's reconfigure clean.

We'll clean, then run configure with CFLAGS="-U_FORTIFY_SOURCE". Also maybe need to disable getgroups detection? But likely fortify causing error. We'll try.

compile-bench> cd /home/peter/build/coreutils-5.0 && make distclean
Making distclean in tests
make[1]: Entering directory '/home/peter/build/coreutils-5.0/tests'
Making distclean in wc
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/wc'
test -z "a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E" || rm -f a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/wc'
Making distclean in uniq
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/uniq'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E" || rm -f 1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/uniq'
Making distclean in unexpand
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/unexpand'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/unexpand'
Making distclean in tsort
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tsort'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/tsort'
Making distclean in tr
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tr'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E a.O a.E b.O b.E c.O c.E d.O d.E e.O e.E f.O f.E g.O g.E h.O h.E i.O i.E j.O j.E k.O k.E l.O l.E m.O m.E n.O n.E o.O o.E p.O p.E q.O q.E r.O r.E s.O s.E t.O t.E u.O u.E v.O v.E w.O w.E x.O x.E y.O y.E z.O z.E range-a-a.O range-a-a.E null.O null.E upcase.O upcase.E dncase.O dncase.E rep-cclass.O rep-cclass.E rep-1.O rep-1.E rep-2.O rep-2.E rep-3.
[command output truncated]
r/build/coreutils-5.0/man'
Making distclean in doc
make[1]: Entering directory '/home/peter/build/coreutils-5.0/doc'
rm -f coreutils.aux coreutils.cp coreutils.cps coreutils.fl coreutils.fn \
  coreutils.ky coreutils.log coreutils.op coreutils.pg \
  coreutils.tmp coreutils.toc coreutils.tp coreutils.tps \
  coreutils.vr coreutils.dvi coreutils.pdf coreutils.ps
rm -f vti.tmp
rm -f Makefile 
make[1]: Leaving directory '/home/peter/build/coreutils-5.0/doc'
Making distclean in src
make[1]: Entering directory '/home/peter/build/coreutils-5.0/src'
test -z "chgrp chown chmod cp dd dircolors du ginstall link ln dir vdir ls mkdir mkfifo mknod mv readlink rm rmdir shred stat sync touch unlink cat cksum comm csplit cut expand fmt fold head join md5sum nl od paste pr ptx sha1sum sort split sum tac tail tr tsort unexpand uniq wc basename date dirname echo env expr factor false hostname id kill logname pathchk printenv printf pwd seq sleep tee test true tty whoami yes  uname chroot hostid nice pinky users who " || rm -f chgrp chown chmod cp dd dircolors du ginstall link ln dir vdir ls mkdir mkfifo mknod mv readlink rm rmdir shred stat sync touch unlink cat cksum comm csplit cut expand fmt fold head join md5sum nl od paste pr ptx sha1sum sort split sum tac tail tr tsort unexpand uniq wc basename date dirname echo env expr factor false hostname id kill logname pathchk printenv printf pwd seq sleep tee test true tty whoami yes  uname chroot hostid nice pinky users who  > /dev/null 2>&1 || /bin/rm -f chgrp chown chmod cp dd dircolors du ginstall link ln dir vdir ls mkdir mkfifo mknod mv readlink rm rmdir shred stat sync touch unlink cat cksum comm csplit cut expand fmt fold head join md5sum nl od paste pr ptx sha1sum sort split sum tac tail tr tsort unexpand uniq wc basename date dirname echo env expr factor false hostname id kill logname pathchk printenv printf pwd seq sleep tee test true tty whoami yes  uname chroot hostid nice pinky users who 
test -z "groups  nohup su" || rm -f groups  nohup su
rm -f *.o core *.core
rm -f *.tab.c
rm -rf ./.deps
rm -f Makefile 
rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
make[1]: Leaving directory '/home/peter/build/coreutils-5.0/src'
Making distclean in lib
make[1]: Entering directory '/home/peter/build/coreutils-5.0/lib'
test -z "charset.alias ref-add.sed ref-del.sed" || rm -f charset.alias ref-add.sed ref-del.sed
test -z "libfetish.a" || rm -f libfetish.a
rm -f *.o core *.core
rm -f *.tab.c
rm -rf .deps ./.deps
rm -f Makefile 
test -z "ftw.h search.h fnmatch.h" || rm -f ftw.h search.h fnmatch.h
rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
make[1]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
Making distclean in .
make[1]: Entering directory '/home/peter/build/coreutils-5.0'
rm -f Makefile 
rm -f config.h stamp-h1
rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
make[1]: Leaving directory '/home/peter/build/coreutils-5.0'
rm -f config.status config.cache config.log configure.lineno
63 lines
ASSISTANT
Show reasoning

We need to compile coreutils, but we hit error with getgroups due to fortify.h interfering. Perhaps need to disable fortify. Could add CFLAGS to avoid -D_FORTIFY_SOURCE? Usually -D_FORTIFY_SOURCE=2 is default in Alpine's gcc? Might need to add -D_GNU_SOURCE? Actually getgroups is defined in unistd.h when appropriate. The fortify header expects __orig_getgroups defined via macro. Maybe need to define HAVE_GETGROUPS? Or include proper headers.

Simplify: Instead of building full coreutils, we can just install the binaries that are needed by creating symlinks to the compiled ones. But we still need to compile them. Alternate approach: use 'make' with HAVE_GETGROUPS=no? Could configure with --disable-getgroups? Not standard.

Maybe easier: use existing system coreutils? On Alpine, coreutils is installed, location likely /usr/bin/... So we could copy those binaries to result and symlink. The user wants to compile from source, but if offline, we could still copy. However the instruction: "Please compile the coreutils package". So we must compile.

We need to fix the compile error. The error occurs in lib/posixver.c referencing getgroups. Possibly disabling POSIXVER? maybe configure script can disable building of lib/posixver? It's part of lib for portability. Could try passing CFLAGS to avoid the fortify includes: maybe -U_FORTIFY_SOURCE or -D_FORTIFY_SOURCE=0.

Add environment variable CFLAGS="-U_FORTIFY_SOURCE". Let's try reconfigure with that.

We need to re-extract source because we cleaned. We'll extract again, configure with CFLAGS. Then make.

compile-bench> mkdir -p /home/peter/build && tar -xzf /home/peter/coreutils.tar.gz -C /home/peter/build
[empty output]
ASSISTANT
Show reasoning

We need to compile coreutils v5.0 on Alpine 3.22.1. The earlier attempts failed due to config.h defining ino_t causing duplicate, and also getgroups errors due to fortify headers. We can try to disable fortify or use -D_FORTIFY_SOURCE=0? Or maybe need to add -D_GNU_SOURCE? The getgroups error arises because fortify header expects getgroups to be defined, but maybe missing include before? Actually getgroups is defined in unistd.h. The error indicates that getgroups macro is defined as a function prototype but not declared? Might be due to missing _POSIX_C_SOURCE? Could disable fortify by adding -U_FORTIFY_SOURCE? Simpler: configure with --disable-nls already, but need to add CFLAGS to avoid fortify. Could set CFLAGS="-U_FORTIFY_SOURCE". Also need to avoid defining ino_t. Already commented out. Let's reconfigure with CFLAGS.

We'll clean, re-extract fresh source (already done). Then run ./configure with CFLAGS. Also maybe need to add --disable-libsmack? Not needed.

Proceed: cd build/coreutils-5.0, run ./configure CFLAGS="-U_FORTIFY_SOURCE" --disable-nls --prefix=/home/peter/result. Then make.

Let's try.

compile-bench> cd /home/peter/build/coreutils-5.0 && ./configure CFLAGS='-U_FORTIFY_SOURCE' --disable-nls --prefix=/home/peter/result
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for perl5.003 or newer... no
configure: WARNING:
WARNING: You don't seem to have perl5.003 or newer installed, or you lack
         a usable version of the Perl File::Compare module.  As a result,
         you may be unable to run a few tests or to regenerate certain
         files if you modify the sources from which they are derived.
 
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking whether gcc needs -traditional... no
checking for ranlib... ranlib
checking whether ln -s works... yes
checking for AIX... no
checking for ANSI C header files... no
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking for uname... yes
checking for chroot... yes
checking for gethostid... yes
checking for strerror in -lcposix... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGE_FILES value needed for large files... no
checking for gcc option to accept ANSI C... none needed
checking for function prototypes... yes
checking for ANSI C header files... (cached) no
checking for string.h... (cached) yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for inline... inline
checking for working long double with more range or precision than double... no
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking float.h usability... yes
checking float.h presence... yes
[command output truncated]
checking shadow.h presence... yes
checking for shadow.h... yes
checking for struct spwd.sp_pwdp... yes
checking for getspnam... yes
checking for library containing crypt... none required
checking for msgfmt... no
checking for gmsgfmt... :
checking for xgettext... no
checking for msgmerge... no
checking whether NLS is requested... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating lib/Makefile
config.status: creating man/Makefile
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating tests/basename/Makefile
config.status: creating tests/chgrp/Makefile
config.status: creating tests/chmod/Makefile
config.status: creating tests/chown/Makefile
config.status: creating tests/cp/Makefile
config.status: creating tests/cut/Makefile
config.status: creating tests/date/Makefile
config.status: creating tests/dd/Makefile
config.status: creating tests/dircolors/Makefile
config.status: creating tests/du/Makefile
config.status: creating tests/expr/Makefile
config.status: creating tests/factor/Makefile
config.status: creating tests/fmt/Makefile
config.status: creating tests/head/Makefile
config.status: creating tests/install/Makefile
config.status: creating tests/join/Makefile
config.status: creating tests/ln/Makefile
config.status: creating tests/ls-2/Makefile
config.status: creating tests/ls/Makefile
config.status: creating tests/md5sum/Makefile
config.status: creating tests/misc/Makefile
config.status: creating tests/mkdir/Makefile
config.status: creating tests/mv/Makefile
config.status: creating tests/od/Makefile
config.status: creating tests/pr/Makefile
config.status: creating tests/rm/Makefile
config.status: creating tests/rmdir/Makefile
config.status: creating tests/seq/Makefile
config.status: creating tests/sha1sum/Makefile
config.status: creating tests/shred/Makefile
config.status: creating tests/sort/Makefile
config.status: creating tests/stty/Makefile
config.status: creating tests/sum/Makefile
config.status: creating tests/tac/Makefile
config.status: creating tests/tail-2/Makefile
config.status: creating tests/tail/Makefile
config.status: creating tests/test/Makefile
config.status: creating tests/touch/Makefile
config.status: creating tests/tr/Makefile
config.status: creating tests/tsort/Makefile
config.status: creating tests/unexpand/Makefile
config.status: creating tests/uniq/Makefile
config.status: creating tests/wc/Makefile
config.status: creating config.h
config.status: linking ./lib/fnmatch_.h to lib/fnmatch.h
config.status: linking ./lib/ftw_.h to lib/ftw.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
141 lines
ASSISTANT
Show reasoning

We need to compile coreutils v5.0 on Alpine 3.22.1. The earlier attempts failed due to fortify headers causing getgroups errors. We attempted to disable fortify by passing CFLAGS '-U_FORTIFY_SOURCE' but still errors. The error is from /usr/include/fortify/unistd.h which defines getgroups macro causing conflict. Perhaps need to define _FORTIFY_SOURCE=0 or disable fortify includes. Could also add -D_FORTIFY_SOURCE=0. Or include -D_FORTIFY_SOURCE=0 -D_GNU_SOURCE? Actually the macro getgroups is defined as a fortify wrapper; the code expects getgroups function prototype. The error arises because fortify header expects getgroups to be defined as function, but maybe missing include of unistd.h? In posixver.c they include unistd.h? The error is typical when _FORTIFY_SOURCE is defined but getgroups is not declared due to missing _POSIX_C_SOURCE? Could disable fortify by adding -U_FORTIFY_SOURCE and -D_FORTIFY_SOURCE=0. Let's try configure with CFLAGS='-U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0' and also LDFLAGS maybe. Also need to ensure we have needed headers. Let's try building again.

compile-bench> cd /home/peter/build/coreutils-5.0 && make distclean && ./configure CFLAGS='-U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0' --disable-nls --prefix=/home/peter/result
Making distclean in tests
make[1]: Entering directory '/home/peter/build/coreutils-5.0/tests'
Making distclean in wc
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/wc'
test -z "a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E" || rm -f a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/wc'
Making distclean in uniq
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/uniq'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E" || rm -f 1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/uniq'
Making distclean in unexpand
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/unexpand'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/unexpand'
Making distclean in tsort
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tsort'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/tsort'
Making distclean in tr
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tr'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E a.O a.E b.O b.E c.O c.E d.O d.E e.O e.E f.O f.E g.O g.E h.O h.E i.O i.E j.O j.E k.O k.E l.O l.E m.O m.E n.O n.E o.O o.E p.O p.E q.O q.E r.O r.E s.O s.E t.O t.E u.O u.E v.O v.E w.O w.E x.O x.E y.O y.E z.O z.E range-a-a.O range-a-a.E null.O null.E upcase.O upcase.E dncase.O dncase.E rep-cclass.O rep-cclass.E rep-1.O rep-1.E rep-2.O rep-2.E rep-3.
[command output truncated]
ining getspnam... none required
checking shadow.h usability... yes
checking shadow.h presence... yes
checking for shadow.h... yes
checking for struct spwd.sp_pwdp... yes
checking for getspnam... yes
checking for library containing crypt... none required
checking for msgfmt... no
checking for gmsgfmt... :
checking for xgettext... no
checking for msgmerge... no
checking whether NLS is requested... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating lib/Makefile
config.status: creating man/Makefile
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating tests/basename/Makefile
config.status: creating tests/chgrp/Makefile
config.status: creating tests/chmod/Makefile
config.status: creating tests/chown/Makefile
config.status: creating tests/cp/Makefile
config.status: creating tests/cut/Makefile
config.status: creating tests/date/Makefile
config.status: creating tests/dd/Makefile
config.status: creating tests/dircolors/Makefile
config.status: creating tests/du/Makefile
config.status: creating tests/expr/Makefile
config.status: creating tests/factor/Makefile
config.status: creating tests/fmt/Makefile
config.status: creating tests/head/Makefile
config.status: creating tests/install/Makefile
config.status: creating tests/join/Makefile
config.status: creating tests/ln/Makefile
config.status: creating tests/ls-2/Makefile
config.status: creating tests/ls/Makefile
config.status: creating tests/md5sum/Makefile
config.status: creating tests/misc/Makefile
config.status: creating tests/mkdir/Makefile
config.status: creating tests/mv/Makefile
config.status: creating tests/od/Makefile
config.status: creating tests/pr/Makefile
config.status: creating tests/rm/Makefile
config.status: creating tests/rmdir/Makefile
config.status: creating tests/seq/Makefile
config.status: creating tests/sha1sum/Makefile
config.status: creating tests/shred/Makefile
config.status: creating tests/sort/Makefile
config.status: creating tests/stty/Makefile
config.status: creating tests/sum/Makefile
config.status: creating tests/tac/Makefile
config.status: creating tests/tail-2/Makefile
config.status: creating tests/tail/Makefile
config.status: creating tests/test/Makefile
config.status: creating tests/touch/Makefile
config.status: creating tests/tr/Makefile
config.status: creating tests/tsort/Makefile
config.status: creating tests/unexpand/Makefile
config.status: creating tests/uniq/Makefile
config.status: creating tests/wc/Makefile
config.status: creating config.h
config.status: linking ./lib/fnmatch_.h to lib/fnmatch.h
config.status: linking ./lib/ftw_.h to lib/ftw.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
96 lines
ASSISTANT
Show reasoning

The coreutils fails due to fortify headers causing errors. Perhaps we can disable fortify by adding -U_FORTIFY_SOURCE and define __FORTIFY_SOURCE 0, maybe also need to add -fno-stack-protector? The error is coming from /usr/include/fortify/unistd.h referencing getgroups which fails because __FORTIFY_SOURCE macro? Actually fortify defines a macro wrapper for getgroups that expects __orig_getgroups defined elsewhere. Possibly we need to define _FORTIFY_SOURCE to 0, which we tried with -D_FORTIFY_SOURCE=0. But still includes /usr/include/fortify/unistd.h. Maybe need to define __USE_FORTIFY_LEVEL 0? Alternatively, we can add -U__USE_FORTIFY_LEVEL? Simpler: maybe disable using the system's fortify headers by adding -isystem /usr/include without fortify? Another approach: add -D_FORTIFY_SOURCE=0 -U_FORTIFY_SOURCE earlier already.

But the errors persist, perhaps because config.h includes which includes fortify unconditionally if _FORTIFY_SOURCE is defined and >0. But we defined to 0, which should disable. However _FORTIFY_SOURCE may be defined by GCC default to 2 if -D_FORTIFY_SOURCE is not set and -O2? Actually GCC defines it only when -D_FORTIFY_SOURCE=2 is passed manually. So maybe not the issue.

Maybe the error is from using a newer glibc where getgroups is defined with __USE_GNU etc. The error arises because fortify/unistd.h expects getgroups to have a prototype in unistd.h but maybe missing due to missing _POSIX_C_SOURCE? However typical builds succeed.

Maybe the failure due to missing -D_GNU_SOURCE? But coreutils configure usually defines needed macros.

Simplify: Instead of compiling coreutils fully, we could just install the precompiled binaries? However we need to compile.

Another approach: Use make -C src to compile just the utilities? But still same lib errors.

Maybe we can disable building lib (which provides getgroups wrappers). Coreutils's lib uses getgroups only on certain platforms. Could we configure with --disable-lib? Not sure.

Search for posixver.c uses getgroups to detect POSIX version. Could patch posixver.c to avoid getgroups call.

Simpler: Provide stub for getgroups: define macro getgroups as something else. But we could edit posixver.c to not include fortify. Let's view posixver.c.

compile-bench> sed -n '1,120p' /home/peter/build/coreutils-5.0/lib/posixver.c
/* Which POSIX version to conform to, for utilities.

   Copyright (C) 2002 Free Software Foundation, Inc.

   This program is free software; you can redistribute it and/or modify it
   under the terms of the GNU Library General Public License as published
   by the Free Software Foundation; either version 2, or (at your option)
   any later version.

   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
   Library General Public License for more details.

   You should have received a copy of the GNU Library General Public
   License along with this program; if not, write to the Free Software
   Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307,
   USA.  */

/* Written by Paul Eggert.  */

#if HAVE_CONFIG_H
# include <config.h>
#endif

#include <limits.h>

#include <stdlib.h>
#if !HAVE_DECL_GETENV && !defined getenv
char *getenv ();
#endif

#if HAVE_UNISTD_H
# include <unistd.h>
#endif
#ifndef _POSIX2_VERSION
# define _POSIX2_VERSION 0
#endif

/* The POSIX version that utilities should conform to.  The default is
   specified by the system.  */

int
posix2_version (void)
{
  long int v = _POSIX2_VERSION;
  char const *s = getenv ("_POSIX2_VERSION");

  if (s && *s)
    {
      char *e;
      long int i = strtol (s, &e, 10);
      if (! *e)
	v = i;
    }

  return v < INT_MIN ? INT_MIN : v < INT_MAX ? v : INT_MAX;
}
59 lines
ASSISTANT
Show reasoning

The build fails due to fortify source causing getgroups macro issues. We attempted to disable fortify by -U_FORTIFY_SOURCE but still includes fortify headers. Need to disable fortify entirely: maybe set CFLAGS='-U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -D_FORTIFY_SOURCE=0' but still includes which defines getgroups macro via fortify. Could also add -D_FORTIFY_SOURCE=0 and -D_FORTIFY_SOURCE_DISABLE? Actually the issue is that fortify defines getgroups as macro to _FORTIFY_FN(getgroups). To avoid, we can define __USE_FORTIFY_LEVEL=0 before including headers. Add -D_FORTIFY_SOURCE=0 -D_FORTIFY_LEVEL=0? The macro is _FORTIFY_SOURCE. Setting to 0 should disable. But still the header may still define macro? In glibc, if _FORTIFY_SOURCE is defined and >0, macros are defined. If undefined or 0, not. So -U_FORTIFY_SOURCE should undefine. But maybe the build system defines it later. Could set CFLAGS='-D_FORTIFY_SOURCE=0' and also add CPPFLAGS='-D_FORTIFY_SOURCE=0'. Let's try configure with CPPFLAGS.

We'll clean and reconfigure with CPPFLAGS='-D_FORTIFY_SOURCE=0' and CFLAGS='-O2 -g'. Also maybe need to add -D_GNU_SOURCE? Not.

Let's redo: make distclean, then configure with CPPFLAGS.

compile-bench> cd /home/peter/build/coreutils-5.0 && make distclean && ./configure CPPFLAGS='-D_FORTIFY_SOURCE=0' CFLAGS='-O2 -g' --disable-nls --prefix=/home/peter/result
Making distclean in tests
make[1]: Entering directory '/home/peter/build/coreutils-5.0/tests'
Making distclean in wc
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/wc'
test -z "a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E" || rm -f a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/wc'
Making distclean in uniq
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/uniq'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E" || rm -f 1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/uniq'
Making distclean in unexpand
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/unexpand'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/unexpand'
Making distclean in tsort
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tsort'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/tsort'
Making distclean in tr
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tr'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E a.O a.E b.O b.E c.O c.E d.O d.E e.O e.E f.O f.E g.O g.E h.O h.E i.O i.E j.O j.E k.O k.E l.O l.E m.O m.E n.O n.E o.O o.E p.O p.E q.O q.E r.O r.E s.O s.E t.O t.E u.O u.E v.O v.E w.O w.E x.O x.E y.O y.E z.O z.E range-a-a.O range-a-a.E null.O null.E upcase.O upcase.E dncase.O dncase.E rep-cclass.O rep-cclass.E rep-1.O rep-1.E rep-2.O rep-2.E rep-3.
[command output truncated]
ining getspnam... none required
checking shadow.h usability... yes
checking shadow.h presence... yes
checking for shadow.h... yes
checking for struct spwd.sp_pwdp... yes
checking for getspnam... yes
checking for library containing crypt... none required
checking for msgfmt... no
checking for gmsgfmt... :
checking for xgettext... no
checking for msgmerge... no
checking whether NLS is requested... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating lib/Makefile
config.status: creating man/Makefile
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating tests/basename/Makefile
config.status: creating tests/chgrp/Makefile
config.status: creating tests/chmod/Makefile
config.status: creating tests/chown/Makefile
config.status: creating tests/cp/Makefile
config.status: creating tests/cut/Makefile
config.status: creating tests/date/Makefile
config.status: creating tests/dd/Makefile
config.status: creating tests/dircolors/Makefile
config.status: creating tests/du/Makefile
config.status: creating tests/expr/Makefile
config.status: creating tests/factor/Makefile
config.status: creating tests/fmt/Makefile
config.status: creating tests/head/Makefile
config.status: creating tests/install/Makefile
config.status: creating tests/join/Makefile
config.status: creating tests/ln/Makefile
config.status: creating tests/ls-2/Makefile
config.status: creating tests/ls/Makefile
config.status: creating tests/md5sum/Makefile
config.status: creating tests/misc/Makefile
config.status: creating tests/mkdir/Makefile
config.status: creating tests/mv/Makefile
config.status: creating tests/od/Makefile
config.status: creating tests/pr/Makefile
config.status: creating tests/rm/Makefile
config.status: creating tests/rmdir/Makefile
config.status: creating tests/seq/Makefile
config.status: creating tests/sha1sum/Makefile
config.status: creating tests/shred/Makefile
config.status: creating tests/sort/Makefile
config.status: creating tests/stty/Makefile
config.status: creating tests/sum/Makefile
config.status: creating tests/tac/Makefile
config.status: creating tests/tail-2/Makefile
config.status: creating tests/tail/Makefile
config.status: creating tests/test/Makefile
config.status: creating tests/touch/Makefile
config.status: creating tests/tr/Makefile
config.status: creating tests/tsort/Makefile
config.status: creating tests/unexpand/Makefile
config.status: creating tests/uniq/Makefile
config.status: creating tests/wc/Makefile
config.status: creating config.h
config.status: linking ./lib/fnmatch_.h to lib/fnmatch.h
config.status: linking ./lib/ftw_.h to lib/ftw.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
96 lines
ASSISTANT
Show reasoning

We need to compile coreutils v5.0 on Alpine. The errors were due to fortify source causing getgroups macro issues and duplicate ino_t definition. We commented out ino_t define. Still getgroups errors from fortify. We can disable fortify by adding -U_FORTIFY_SOURCE or -D_FORTIFY_SOURCE=0 and also maybe define _FORTIFY_SOURCE=0. Already tried CPPFLAGS='-D_FORTIFY_SOURCE=0' but still includes fortify headers which define getgroups macro. Perhaps need to add -U_FORTIFY_SOURCE to undef. Also need to define _FORTIFY_SOURCE=0 before including any headers. Using -D_FORTIFY_SOURCE=0 should work. But still errors. Maybe the system's /usr/include/fortify/unistd.h is included because of -D_FORTIFY_SOURCE? Actually fortify headers are included via when _FORTIFY_SOURCE is defined and not -O0. We set -D_FORTIFY_SOURCE=0, but maybe still defined elsewhere. Could also add -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -D_FORTIFY_SOURCE=0? Simpler: disable fortify by adding -U_FORTIFY_SOURCE and also -D_FORTIFY_SOURCE=0. Also maybe need to add -D_FORTIFY_SOURCE=0 -D_FORTIFY_SOURCE=0? Let's try configure with CFLAGS='-O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0' and also CPPFLAGS='-U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0'. Also we already commented out ino_t define.

Let's reconfigure and make.

compile-bench> cd /home/peter/build/coreutils-5.0 && make distclean && ./configure CFLAGS='-O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0' CPPFLAGS='-U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0' --disable-nls --prefix=/home/peter/result
Making distclean in tests
make[1]: Entering directory '/home/peter/build/coreutils-5.0/tests'
Making distclean in wc
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/wc'
test -z "a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E" || rm -f a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/wc'
Making distclean in uniq
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/uniq'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E" || rm -f 1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/uniq'
Making distclean in unexpand
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/unexpand'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/unexpand'
Making distclean in tsort
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tsort'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/tsort'
Making distclean in tr
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tr'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E a.O a.E b.O b.E c.O c.E d.O d.E e.O e.E f.O f.E g.O g.E h.O h.E i.O i.E j.O j.E k.O k.E l.O l.E m.O m.E n.O n.E o.O o.E p.O p.E q.O q.E r.O r.E s.O s.E t.O t.E u.O u.E v.O v.E w.O w.E x.O x.E y.O y.E z.O z.E range-a-a.O range-a-a.E null.O null.E upcase.O upcase.E dncase.O dncase.E rep-cclass.O rep-cclass.E rep-1.O rep-1.E rep-2.O rep-2.E rep-3.
[command output truncated]
ining getspnam... none required
checking shadow.h usability... yes
checking shadow.h presence... yes
checking for shadow.h... yes
checking for struct spwd.sp_pwdp... yes
checking for getspnam... yes
checking for library containing crypt... none required
checking for msgfmt... no
checking for gmsgfmt... :
checking for xgettext... no
checking for msgmerge... no
checking whether NLS is requested... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating lib/Makefile
config.status: creating man/Makefile
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating tests/basename/Makefile
config.status: creating tests/chgrp/Makefile
config.status: creating tests/chmod/Makefile
config.status: creating tests/chown/Makefile
config.status: creating tests/cp/Makefile
config.status: creating tests/cut/Makefile
config.status: creating tests/date/Makefile
config.status: creating tests/dd/Makefile
config.status: creating tests/dircolors/Makefile
config.status: creating tests/du/Makefile
config.status: creating tests/expr/Makefile
config.status: creating tests/factor/Makefile
config.status: creating tests/fmt/Makefile
config.status: creating tests/head/Makefile
config.status: creating tests/install/Makefile
config.status: creating tests/join/Makefile
config.status: creating tests/ln/Makefile
config.status: creating tests/ls-2/Makefile
config.status: creating tests/ls/Makefile
config.status: creating tests/md5sum/Makefile
config.status: creating tests/misc/Makefile
config.status: creating tests/mkdir/Makefile
config.status: creating tests/mv/Makefile
config.status: creating tests/od/Makefile
config.status: creating tests/pr/Makefile
config.status: creating tests/rm/Makefile
config.status: creating tests/rmdir/Makefile
config.status: creating tests/seq/Makefile
config.status: creating tests/sha1sum/Makefile
config.status: creating tests/shred/Makefile
config.status: creating tests/sort/Makefile
config.status: creating tests/stty/Makefile
config.status: creating tests/sum/Makefile
config.status: creating tests/tac/Makefile
config.status: creating tests/tail-2/Makefile
config.status: creating tests/tail/Makefile
config.status: creating tests/test/Makefile
config.status: creating tests/touch/Makefile
config.status: creating tests/tr/Makefile
config.status: creating tests/tsort/Makefile
config.status: creating tests/unexpand/Makefile
config.status: creating tests/uniq/Makefile
config.status: creating tests/wc/Makefile
config.status: creating config.h
config.status: linking ./lib/fnmatch_.h to lib/fnmatch.h
config.status: linking ./lib/ftw_.h to lib/ftw.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
96 lines
ASSISTANT
Show reasoning

We still have the same problem: posixver.c includes unistd.h which defines getgroups, but due to fortify macro interfering. The error arises in lib/posixver.c? Actually error occurs in lib/posixver.o. The source includes which on Alpine may have fortify wrappers causing compile error because of macro _FORTIFY_SOURCE defined? We tried disabling fortify by -U_FORTIFY_SOURCE etc., but still the compile sees _FORTIFY_SOURCE macros from default compile flags (maybe -D_FORTIFY_SOURCE=2 by default in Alpine). Need to add -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 in CFLAGS and CPPFLAGS, and also possibly set -fno-stack-protector? The error: In fortify/unistd.h they rename getgroups to something else using macro _FORTIFY_SOURCE. The code may call getgroups? Actually posixver.c does not use getgroups, but maybe other files do (e.g., lib/posixver.c includes some other code). The error occurs because getgroups macro conflict due to missing prototype? In unistd.h getgroups is defined as __FORTIFY... maybe expects something else.

Simplify: Instead of trying to compile whole coreutils, maybe we can use make install-strip? But we need successful compile.

Maybe we can configure with --disable-largefile? Not relevant.

Alternative: Build coreutils with "make -C src" maybe not compile lib? The getgroups error occurs when compiling lib/posixver.c, which is part of library. The issue is missing getgroups prototype due to missing ? Actually config.h defines getgroups prototype? Let's examine config.h for getgroups.

compile-bench> grep -R "getgroups" -n /home/peter/build/coreutils-5.0/config.h
65:/* Define to the type of elements in the array set by `getgroups'. Usually
397:/* Define to 1 if your system has a working `getgroups' function. */
1345:/* Define as rpl_getgroups if getgroups doesn't work right. */
1346:#define getgroups rpl_getgroups
5 lines
ASSISTANT
Show reasoning

We need to make coreutils compile. The errors are due to fortify source definitions causing getgroups macro issues, and duplicate ino_t definition. We commented out ino_t definition. Now we have errors from getgroups macro expansion. config.h defines getgroups as rpl_getgroups if function not working. But fortify overrides with macro? The error is that getgroups is defined as a function macro in fortify headers causing conflict. To avoid, we should define _FORTIFY_SOURCE=0 which we attempted. But maybe still macro defined via default includes. Might need -U_FORTIFY_SOURCE and also include -D_FORTIFY_SOURCE=0 earlier. We already passed those flags. However, the error still appears: from /usr/include/fortify/unistd.h:75:1 error: 'getgroups' undeclared here. That suggests that the system's unistd.h expects getgroups prototype but fortify overrides.

We can disable inclusion of fortify headers by defining __USE_FORTIFY_LEVEL=0? Or adding -D_FORTIFY_SOURCE=0 may not avoid macro definitions. Maybe compile with -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 is fine but still includes which declares getgroups, but fortify header expects underlying __orig_getgroups. The error arises because __orig_getgroups not defined. This seems due to mismatch with glibc version and missing _FORTIFY_SOURCE macro maybe not defined, but fortify.h still defines macro getgroups as wrapper referencing __orig_getgroups which only exists if original function is present. It may rely on hidden symbol.

Simpler: we can force compile without including fortify headers by adding -U__USE_FORTIFY_LEVEL? Not sure.

Alternative: Use --disable-make-install? Not.

Maybe easier: Use make install after building only coreutils utilities without lib? Actually the errors are in lib building. Perhaps we can skip building lib that includes getgroups. The lib contains functions like fnmatch etc. Might be needed.

Could use configure flag --disable-libsmack? No.

Alternative approach: Use pre-existing binary? Not allowed.

Maybe we can patch posixver.c or other source to avoid including unistd.h? The error arises in lib/posixver.c which includes unistd.h indirectly via config.h maybe? Actually posixver.c includes only if HAVE_UNISTD_H. That pulls fortify. But we could add #undef getgroups before inclusion? But the error occurs at compilation of posixver.c: the include chain leads to error from fortify header at line 75 where getgroups macro is defined but underlying function not declared. The error arises because unistd.h includes etc.

Maybe we can set CPPFLAGS to -D_GNU_SOURCE? Not.

Potential workaround: define _FORTIFY_SOURCE=0 should prevent fortify headers from being included (the macros are conditional on that). However maybe glibc includes regardless if _FORTIFY_SOURCE defined? Actually includes and if _FORTIFY_SOURCE defined then includes which defines macros. So setting _FORTIFY_SOURCE=0 may still include but not define macros? Not sure.

Given difficulty, maybe we can bypass building lib by using "make install" with "make" maybe not needed to compile lib? But coreutils uses lib for some utilities.

Alternative: Use "make -C src" only compile src? The makefile may have separate target. Could try "make src". Let's try building src only.

compile-bench> cd /home/peter/build/coreutils-5.0 && make src -j$(nproc)
make: Nothing to be done for 'src'.
ASSISTANT
Show reasoning

We need to compile coreutils successfully. The earlier errors were due to fortify source causing getgroups macro issues. We attempted to disable fortify. Still errors? The latest configure succeeded, but we haven't built yet. Let's try make all now.

compile-bench> cd /home/peter/build/coreutils-5.0 && make -j$(nproc)
make  all-recursive
make[1]: Entering directory '/home/peter/build/coreutils-5.0'
Making all in lib
make[2]: Entering directory '/home/peter/build/coreutils-5.0/lib'
make  all-am
make[3]: Entering directory '/home/peter/build/coreutils-5.0/lib'
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -MT acl.o -MD -MP -MF ".deps/acl.Tpo" \
  -c -o acl.o `test -f 'acl.c' || echo './'`acl.c; \
then mv ".deps/acl.Tpo" ".deps/acl.Po"; \
else rm -f ".deps/acl.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -MT getdate.o -MD -MP -MF ".deps/getdate.Tpo" \
  -c -o getdate.o `test -f 'getdate.c' || echo './'`getdate.c; \
then mv ".deps/getdate.Tpo" ".deps/getdate.Po"; \
else rm -f ".deps/getdate.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -MT posixtm.o -MD -MP -MF ".deps/posixtm.Tpo" \
  -c -o posixtm.o `test -f 'posixtm.c' || echo './'`posixtm.c; \
then mv ".deps/posixtm.Tpo" ".deps/posixtm.Po"; \
else rm -f ".deps/posixtm.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -MT posixver.o -MD -MP -MF ".deps/posixver.Tpo" \
  -c -o posixver.o `test -f 'posixver.c' || echo './'`posixver.c; \
then mv ".deps/posixver.Tpo" ".deps/posixver.Po"; \
else rm -f ".deps/posixver.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -MT strftime.o -MD -MP -MF ".deps/strftime.Tpo" \
  -c -o strftime.o `test -f 'strftime.c' || echo './'`strftime.c; \
then mv ".deps/strftime.Tpo" ".deps/strftime.Po"; \
else rm -f ".deps/strftime.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -MT getopt.o -MD -MP -MF ".deps/getopt.Tpo" \
  -c -o getopt.o `test -f 'getopt.c' || echo './'`getopt.c; \
then mv ".deps/getopt.Tpo" ".deps/getopt.Po"; \
else rm -f ".deps/getopt.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -MT getopt1.o -MD -MP -MF ".deps/getopt1.Tpo" \
  -c -o getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c; \
then mv ".deps/getopt1.Tpo" ".deps/getopt1.Po"; \
else rm -f ".deps/getopt1.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 
[command output truncated]
.deps/memcasecmp.Tpo" ".deps/memcasecmp.Po"; \
else rm -f ".deps/memcasecmp.Tpo"; exit 1; \
fi
md5.c: In function 'md5_finish_ctx':
md5.c:129:3: error: implicit declaration of function 'memcpy' [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;]
  129 |   memcpy (&ctx->buffer[bytes], fillbuf, pad);
      |   ^~~~~~
md5.c:40:1: note: include '<string.h>' or provide a declaration of 'memcpy'
   39 | #include "unlocked-io.h"
  +++ |+#include <string.h>
   40 | 
md5.c:129:3: warning: incompatible implicit declaration of built-in function 'memcpy' [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wbuiltin-declaration-mismatch-Wbuiltin-declaration-mismatch]8;;]
  129 |   memcpy (&ctx->buffer[bytes], fillbuf, pad);
      |   ^~~~~~
md5.c:129:3: note: include '<string.h>' or provide a declaration of 'memcpy'
md5.c: In function 'md5_process_bytes':
md5.c:246:7: warning: incompatible implicit declaration of built-in function 'memcpy' [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wbuiltin-declaration-mismatch-Wbuiltin-declaration-mismatch]8;;]
  246 |       memcpy (&ctx->buffer[left_over], buffer, add);
      |       ^~~~~~
md5.c:246:7: note: include '<string.h>' or provide a declaration of 'memcpy'
md5.c:277:32: warning: incompatible implicit declaration of built-in function 'memcpy' [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wbuiltin-declaration-mismatch-Wbuiltin-declaration-mismatch]8;;]
  277 |             md5_process_block (memcpy (ctx->buffer, buffer, 64), 64, ctx);
      |                                ^~~~~~
md5.c:277:32: note: include '<string.h>' or provide a declaration of 'memcpy'
md5.c:295:7: warning: incompatible implicit declaration of built-in function 'memcpy' [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wbuiltin-declaration-mismatch-Wbuiltin-declaration-mismatch]8;;]
  295 |       memcpy (&ctx->buffer[left_over], buffer, len);
      |       ^~~~~~
md5.c:295:7: note: include '<string.h>' or provide a declaration of 'memcpy'
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -MT memcoll.o -MD -MP -MF ".deps/memcoll.Tpo" \
  -c -o memcoll.o `test -f 'memcoll.c' || echo './'`memcoll.c; \
then mv ".deps/memcoll.Tpo" ".deps/memcoll.Po"; \
else rm -f ".deps/memcoll.Tpo"; exit 1; \
fi
make[3]: *** [Makefile:590: md5.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[2]: *** [Makefile:414: all] Error 2
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[1]: *** [Makefile:244: all-recursive] Error 1
make[1]: Leaving directory '/home/peter/build/coreutils-5.0'
make: *** [Makefile:199: all] Error 2
85 lines
ASSISTANT
Show reasoning

The build fails due to missing include. We can patch md5.c to include it. Look at file location: coreutils-5.0/lib/md5.c. Let's inspect around the top.

compile-bench> sed -n '1,80p' /home/peter/build/coreutils-5.0/lib/md5.c
/* md5.c - Functions to compute MD5 message digest of files or memory blocks
   according to the definition of MD5 in RFC 1321 from April 1992.
   Copyright (C) 1995, 1996, 2001, 2003 Free Software Foundation, Inc.
   NOTE: The canonical source of this file is maintained with the GNU C
   Library.  Bugs can be reported to [email protected].

   This program is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by the
   Free Software Foundation; either version 2, or (at your option) any
   later version.

   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software Foundation,
   Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.  */

/* Written by Ulrich Drepper <[email protected]>, 1995.  */

#ifdef HAVE_CONFIG_H
# include <config.h>
#endif

#include <sys/types.h>

#if STDC_HEADERS || defined _LIBC
# include <stdlib.h>
# include <string.h>
#else
# ifndef HAVE_MEMCPY
#  define memcpy(d, s, n) bcopy ((s), (d), (n))
# endif
#endif

#include "md5.h"
#include "unlocked-io.h"

#ifdef _LIBC
# include <endian.h>
# if __BYTE_ORDER == __BIG_ENDIAN
#  define WORDS_BIGENDIAN 1
# endif
/* We need to keep the namespace clean so define the MD5 function
   protected using leading __ .  */
# define md5_init_ctx __md5_init_ctx
# define md5_process_block __md5_process_block
# define md5_process_bytes __md5_process_bytes
# define md5_finish_ctx __md5_finish_ctx
# define md5_read_ctx __md5_read_ctx
# define md5_stream __md5_stream
# define md5_buffer __md5_buffer
#endif

#ifdef WORDS_BIGENDIAN
# define SWAP(n)							\
    (((n) << 24) | (((n) & 0xff00) << 8) | (((n) >> 8) & 0xff00) | ((n) >> 24))
#else
# define SWAP(n) (n)
#endif

#define BLOCKSIZE 4096
/* Ensure that BLOCKSIZE is a multiple of 64.  */
#if BLOCKSIZE % 64 != 0
/* FIXME-someday (soon?): use #error instead of this kludge.  */
"invalid BLOCKSIZE"
#endif

/* This array contains the bytes used to pad the buffer to the next
   64-byte boundary.  (RFC 1321, 3.1: Step 1)  */
static const unsigned char fillbuf[64] = { 0x80, 0 /* , 0, 0, ...  */ };


/* Initialize structure containing state of computation.
   (RFC 1321, 3.3: Step 3)  */
void
md5_init_ctx (ctx)
     struct md5_ctx *ctx;
81 lines
ASSISTANT
Show reasoning

The build fails due to missing include of string.h for memcpy, but there is already #include under STDC_HEADERS condition. Perhaps STDC_HEADERS is not defined, causing fallback to not include string.h. In config.h, STDC_HEADERS likely defined. Let's check config.h for STDC_HEADERS.

compile-bench> grep -n "STDC_HEADERS" -n /home/peter/build/coreutils-5.0/config.h
1258:/* #undef STDC_HEADERS */
ASSISTANT
Show reasoning

The compile error is missing include for memcpy. But the code already includes under condition STDC_HEADERS or _LIBC. config.h defines STDC_HEADERS as undefined. So the condition fails, and not included. We can define STDC_HEADERS=1 via CFLAGS or modify config.h to define it.

Simpler: add -D_STDC_HEADERS=1 to CFLAGS. Or edit config.h to define STDC_HEADERS.

We'll reconfigure with CFLAGS adding -DSTDC_HEADERS. Let's clean and reconfigure.

compile-bench> cd /home/peter/build/coreutils-5.0 && make distclean && ./configure CFLAGS='-O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS' CPPFLAGS='-U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0' --disable-nls --prefix=/home/peter/result
Making distclean in tests
make[1]: Entering directory '/home/peter/build/coreutils-5.0/tests'
Making distclean in wc
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/wc'
test -z "a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E" || rm -f a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/wc'
Making distclean in uniq
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/uniq'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E" || rm -f 1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/uniq'
Making distclean in unexpand
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/unexpand'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/unexpand'
Making distclean in tsort
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tsort'
rm -f Makefile 
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/tsort'
Making distclean in tr
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tr'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E a.O a.E b.O b.E c.O c.E d.O d.E e.O e.E f.O f.E g.O g.E h.O h.E i.O i.E j.O j.E k.O k.E l.O l.E m.O m.E n.O n.E o.O o.E p.O p.E q.O q.E r.O r.E s.O s.E t.O t.E u.O u.E v.O v.E w.O w.E x.O x.E y.O y.E z.O z.E range-a-a.O range-a-a.E null.O null.E upcase.O upcase.E dncase.O dncase.E rep-cclass.O rep-cclass.E rep-1.O rep-1.E rep-2.O rep-2.E rep-3.
[command output truncated]
ining getspnam... none required
checking shadow.h usability... yes
checking shadow.h presence... yes
checking for shadow.h... yes
checking for struct spwd.sp_pwdp... yes
checking for getspnam... yes
checking for library containing crypt... none required
checking for msgfmt... no
checking for gmsgfmt... :
checking for xgettext... no
checking for msgmerge... no
checking whether NLS is requested... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating lib/Makefile
config.status: creating man/Makefile
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating tests/basename/Makefile
config.status: creating tests/chgrp/Makefile
config.status: creating tests/chmod/Makefile
config.status: creating tests/chown/Makefile
config.status: creating tests/cp/Makefile
config.status: creating tests/cut/Makefile
config.status: creating tests/date/Makefile
config.status: creating tests/dd/Makefile
config.status: creating tests/dircolors/Makefile
config.status: creating tests/du/Makefile
config.status: creating tests/expr/Makefile
config.status: creating tests/factor/Makefile
config.status: creating tests/fmt/Makefile
config.status: creating tests/head/Makefile
config.status: creating tests/install/Makefile
config.status: creating tests/join/Makefile
config.status: creating tests/ln/Makefile
config.status: creating tests/ls-2/Makefile
config.status: creating tests/ls/Makefile
config.status: creating tests/md5sum/Makefile
config.status: creating tests/misc/Makefile
config.status: creating tests/mkdir/Makefile
config.status: creating tests/mv/Makefile
config.status: creating tests/od/Makefile
config.status: creating tests/pr/Makefile
config.status: creating tests/rm/Makefile
config.status: creating tests/rmdir/Makefile
config.status: creating tests/seq/Makefile
config.status: creating tests/sha1sum/Makefile
config.status: creating tests/shred/Makefile
config.status: creating tests/sort/Makefile
config.status: creating tests/stty/Makefile
config.status: creating tests/sum/Makefile
config.status: creating tests/tac/Makefile
config.status: creating tests/tail-2/Makefile
config.status: creating tests/tail/Makefile
config.status: creating tests/test/Makefile
config.status: creating tests/touch/Makefile
config.status: creating tests/tr/Makefile
config.status: creating tests/tsort/Makefile
config.status: creating tests/unexpand/Makefile
config.status: creating tests/uniq/Makefile
config.status: creating tests/wc/Makefile
config.status: creating config.h
config.status: linking ./lib/fnmatch_.h to lib/fnmatch.h
config.status: linking ./lib/ftw_.h to lib/ftw.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
96 lines
ASSISTANT
Show reasoning

We need to compile coreutils. The errors were due to missing includes (string.h) and getgroups issues. We can patch md5.c to include string.h. Also need to define getgroups macro? In config.h, getgroups is defined to rpl_getgroups, but maybe missing implementation. Could disable getgroups usage? Perhaps easier: use make install ignoring lib? Actually coreutils builds many utilities; the errors are in lib/md5.c. Adding #include should fix memcpy errors. Also need to address getgroups compile error earlier; maybe after patching config.h to comment out #define getgroups rpl_getgroups? Let's inspect config.h around that line.

compile-bench> sed -n '1300,1360p' /home/peter/build/coreutils-5.0/config.h
   System headers sometimes define this.
   We just want to avoid a redefinition error message.  */
#ifndef _ALL_SOURCE
/* # undef _ALL_SOURCE */
#endif

/* Number of bits in a file offset, on hosts where this is settable. */
/* #undef _FILE_OFFSET_BITS */

/* Enable GNU extensions on systems that have them.  */
#ifndef _GNU_SOURCE
# define _GNU_SOURCE 1
#endif

/* Define to 1 to make fseeko visible on some hosts (e.g. glibc 2.2). */
/* #undef _LARGEFILE_SOURCE */

/* Define for large files, on AIX-style hosts. */
/* #undef _LARGE_FILES */

/* Define to 1 if on MINIX. */
/* #undef _MINIX */

/* Define to 2 if the system does not provide POSIX.1 features except with
   this defined. */
/* #undef _POSIX_1_SOURCE */

/* Define to 1 if you need to in order for `stat' and other things to work. */
/* #undef _POSIX_SOURCE */

/* Define like PROTOTYPES; this can be used by system headers. */
#define __PROTOTYPES 1

/* Define to rpl_chown if the replacement function should be used. */
#define chown rpl_chown

/* Define to empty if `const' does not conform to ANSI C. */
/* #undef const */

/* Define to rpl_fnmatch if the replacement function should be used. */
#define fnmatch rpl_fnmatch

/* Define to rpl_getcwd if the wrapper function should be used. */
/* #undef getcwd */

/* Define as rpl_getgroups if getgroups doesn't work right. */
#define getgroups rpl_getgroups

/* Define to rpl_gettimeofday if the replacement function should be used. */
#define gettimeofday rpl_gettimeofday

/* Define to `int' if <sys/types.h> doesn't define. */
/* #undef gid_t */

/* Define as `__inline' if that's what the C compiler calls it, or to nothing
   if it is not supported. */
/* #undef inline */

/* Define to `unsigned long' if <sys/types.h> does not define. */
/* #undef ino_t */

61 lines
ASSISTANT
Show reasoning

We need to compile coreutils. We are encountering missing definitions (memcpy) and possibly config.h missing STDC_HEADERS causing missing includes. We can simply modify md5.c to include (we saw it already includes under STDC_HEADERS condition; but STDC_HEADERS is undefined. So we need to define STDC_HEADERS in config.h or pass -DSTDC_HEADERS to compiler. Already attempted to pass -DSTDC_HEADERS via CFLAGS, but maybe not effective because configure generated config.h with #undef STDC_HEADERS, but the code uses #if STDC_HEADERS || defined _LIBC. Since it's undefined, macro is not defined, causing the else block where we don't include . We can modify md5.c to always include unconditionally, but easier: add #define STDC_HEADERS 1 in config.h after its definition. Let's edit config.h accordingly.

compile-bench> apply_patch <<'PATCH' *** Begin Patch *** Update File: /home/peter/build/coreutils-5.0/config.h @@ -/* #undef STDC_HEADERS */ +/* #undef STDC_HEADERS */ +#define STDC_HEADERS 1 *** End Patch PATCH
bash: apply_patch: command not found
ASSISTANT
Show reasoning

We need to fix compile errors. The md5.c missing string.h include. We can add include in md5.c. Also need to define STDC_HEADERS to 1 to get proper includes. We can edit md5.c to include string.h. Also maybe other files need similar. Let's patch md5.c.

We'll use sed to insert include after existing includes. In md5.c after #include and conditional includes, we can add #include unconditionally.

Simpler: add line '#include ' after the existing includes block.

We'll use sed to insert after line containing '#include ' maybe.

Let's open md5.c near includes.

compile-bench> sed -n '1,60p' /home/peter/build/coreutils-5.0/lib/md5.c
/* md5.c - Functions to compute MD5 message digest of files or memory blocks
   according to the definition of MD5 in RFC 1321 from April 1992.
   Copyright (C) 1995, 1996, 2001, 2003 Free Software Foundation, Inc.
   NOTE: The canonical source of this file is maintained with the GNU C
   Library.  Bugs can be reported to [email protected].

   This program is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by the
   Free Software Foundation; either version 2, or (at your option) any
   later version.

   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software Foundation,
   Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.  */

/* Written by Ulrich Drepper <[email protected]>, 1995.  */

#ifdef HAVE_CONFIG_H
# include <config.h>
#endif

#include <sys/types.h>

#if STDC_HEADERS || defined _LIBC
# include <stdlib.h>
# include <string.h>
#else
# ifndef HAVE_MEMCPY
#  define memcpy(d, s, n) bcopy ((s), (d), (n))
# endif
#endif

#include "md5.h"
#include "unlocked-io.h"

#ifdef _LIBC
# include <endian.h>
# if __BYTE_ORDER == __BIG_ENDIAN
#  define WORDS_BIGENDIAN 1
# endif
/* We need to keep the namespace clean so define the MD5 function
   protected using leading __ .  */
# define md5_init_ctx __md5_init_ctx
# define md5_process_block __md5_process_block
# define md5_process_bytes __md5_process_bytes
# define md5_finish_ctx __md5_finish_ctx
# define md5_read_ctx __md5_read_ctx
# define md5_stream __md5_stream
# define md5_buffer __md5_buffer
#endif

#ifdef WORDS_BIGENDIAN
# define SWAP(n)							\
    (((n) << 24) | (((n) & 0xff00) << 8) | (((n) >> 8) & 0xff00) | ((n) >> 24))
#else
61 lines
ASSISTANT
Show reasoning

The compile fails because md5.c expects stdc headers. We tried to define STDC_HEADERS but patch not applied. Need to edit config.h to define STDC_HEADERS as 1. Use sed to replace the line. Let's locate the line with comment "#undef STDC_HEADERS". We saw earlier at 1258. Let's replace that line with "#define STDC_HEADERS 1". Use sed.

compile-bench> sed -i '1258s|/\* #undef STDC_HEADERS \*/|#define STDC_HEADERS 1|' /home/peter/build/coreutils-5.0/config.h
[empty output]
ASSISTANT
Show reasoning

We need to compile coreutils. The errors were due to missing STDC_HEADERS causing missing string.h includes, leading to missing memcpy. We defined STDC_HEADERS. Also earlier we had getgroups issue but config.h defines getgroups rpl_getgroups, which should be fine. Let's try building again.

compile-bench> cd /home/peter/build/coreutils-5.0 && make -j$(nproc)
make  all-recursive
make[1]: Entering directory '/home/peter/build/coreutils-5.0'
Making all in lib
make[2]: Entering directory '/home/peter/build/coreutils-5.0/lib'
make  all-am
make[3]: Entering directory '/home/peter/build/coreutils-5.0/lib'
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT acl.o -MD -MP -MF ".deps/acl.Tpo" \
  -c -o acl.o `test -f 'acl.c' || echo './'`acl.c; \
then mv ".deps/acl.Tpo" ".deps/acl.Po"; \
else rm -f ".deps/acl.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT getdate.o -MD -MP -MF ".deps/getdate.Tpo" \
  -c -o getdate.o `test -f 'getdate.c' || echo './'`getdate.c; \
then mv ".deps/getdate.Tpo" ".deps/getdate.Po"; \
else rm -f ".deps/getdate.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT posixtm.o -MD -MP -MF ".deps/posixtm.Tpo" \
  -c -o posixtm.o `test -f 'posixtm.c' || echo './'`posixtm.c; \
then mv ".deps/posixtm.Tpo" ".deps/posixtm.Po"; \
else rm -f ".deps/posixtm.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT posixver.o -MD -MP -MF ".deps/posixver.Tpo" \
  -c -o posixver.o `test -f 'posixver.c' || echo './'`posixver.c; \
then mv ".deps/posixver.Tpo" ".deps/posixver.Po"; \
else rm -f ".deps/posixver.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT strftime.o -MD -MP -MF ".deps/strftime.Tpo" \
  -c -o strftime.o `test -f 'strftime.c' || echo './'`strftime.c; \
then mv ".deps/strftime.Tpo" ".deps/strftime.Po"; \
else rm -f ".deps/strftime.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT getopt.o -MD -MP -MF ".deps/getopt.Tpo" \
  -c -o getopt.o `test -f 'getopt.c' || echo './'`getopt.c; \
then mv ".deps/getopt.Tpo" ".deps/getopt.Po"; \
else rm -f ".deps/getopt.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT getopt1.o -MD -MP -MF ".deps/getopt1.Tpo" \
  -c -o getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c; \
then mv ".deps/getopt1.Tpo" ".deps/getopt1.Po"; \
else rm -f ".deps/getopt1.Tpo"; exit 1; \
fi
if gcc -DLIBDIR
[command output truncated]
DERS -MT putenv.o -MD -MP -MF ".deps/putenv.Tpo" \
  -c -o putenv.o `test -f 'putenv.c' || echo './'`putenv.c; \
then mv ".deps/putenv.Tpo" ".deps/putenv.Po"; \
else rm -f ".deps/putenv.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT error.o -MD -MP -MF ".deps/error.Tpo" \
  -c -o error.o `test -f 'error.c' || echo './'`error.c; \
then mv ".deps/error.Tpo" ".deps/error.Po"; \
else rm -f ".deps/error.Tpo"; exit 1; \
fi
putenv.c:34:7: warning: conflicting types for built-in function 'malloc'; expected 'void *(long unsigned int)' [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wbuiltin-declaration-mismatch-Wbuiltin-declaration-mismatch]8;;]
   34 | char *malloc ();
      |       ^~~~~~
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT getgroups.o -MD -MP -MF ".deps/getgroups.Tpo" \
  -c -o getgroups.o `test -f 'getgroups.c' || echo './'`getgroups.c; \
then mv ".deps/getgroups.Tpo" ".deps/getgroups.Po"; \
else rm -f ".deps/getgroups.Tpo"; exit 1; \
fi
putenv.c:29:1: note: 'malloc' is declared in header '<stdlib.h>'
   28 | #include <errno.h>
  +++ |+#include <stdlib.h>
   29 | 
getgroups.c: In function 'rpl_getgroups':
getgroups.c:40:12: error: implicit declaration of function 'getgroups'; did you mean 'rpl_getgroups'? [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;]
   40 |     return getgroups (n, group);
      |            ^~~~~~~~~
      |            rpl_getgroups
getgroups.c:53:3: error: implicit declaration of function 'free' [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;]
   53 |   free (gbuf);
      |   ^~~~
getgroups.c:25:1: note: include '<stdlib.h>' or provide a declaration of 'free'
   24 | #include "xalloc.h"
  +++ |+#include <stdlib.h>
   25 | 
getgroups.c:53:3: warning: incompatible implicit declaration of built-in function 'free' [ttps://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wbuiltin-declaration-mismatch-Wbuiltin-declaration-mismatch]8;;]
   53 |   free (gbuf);
      |   ^~~~
getgroups.c:53:3: note: include '<stdlib.h>' or provide a declaration of 'free'
make[3]: *** [Makefile:590: getgroups.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[2]: *** [Makefile:414: all] Error 2
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[1]: *** [Makefile:244: all-recursive] Error 1
make[1]: Leaving directory '/home/peter/build/coreutils-5.0'
make: *** [Makefile:199: all] Error 2
90 lines
ASSISTANT
Show reasoning

We need to compile coreutils v5.0. The errors are due to missing includes and definitions. The original configure should have set appropriate macros. The errors about getgroups: missing maybe? Actually getgroups is declared in unistd.h. The file getgroups.c likely includes something but maybe missing. Let's inspect getgroups.c.

compile-bench> sed -n '1,120p' /home/peter/build/coreutils-5.0/lib/getgroups.c
/* provide consistent interface to getgroups for systems that don't allow N==0
   Copyright (C) 1996, 1999 Free Software Foundation, Inc.

   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
   the Free Software Foundation; either version 2, or (at your option)
   any later version.

   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software Foundation,
   Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.  */

/* written by Jim Meyering */

#include <config.h>
#include <stdio.h>
#include <sys/types.h>

#include "xalloc.h"

/* On at least Ultrix 4.3 and NextStep 3.2, getgroups (0, 0) always fails.
   On other systems, it returns the number of supplemental groups for the
   process.  This function handles that special case and lets the system-
   provided function handle all others. */

int
getgroups (size_t n, GETGROUPS_T *group)
{
  int n_groups;
  GETGROUPS_T *gbuf;

#undef getgroups

  if (n != 0)
    return getgroups (n, group);

  n = 20;
  gbuf = NULL;
  while (1)
    {
      gbuf = (GETGROUPS_T *) xrealloc (gbuf, n * sizeof (GETGROUPS_T));
      n_groups = getgroups (n, gbuf);
      if (n_groups < n)
	break;
      n += 10;
    }

  free (gbuf);

  return n_groups;
}
57 lines
ASSISTANT
Show reasoning

We need to compile coreutils. Issues: missing headers and redefinition issues. The code defines a function getgroups that conflicts with system getgroups. In config.h, they set #define getgroups rpl_getgroups to replace. In getgroups.c they #undef getgroups inside the function? Actually they #undef getgroups after variable declaration? They have #undef getgroups before using system getgroups. But earlier they defined getgroups macro to rpl_getgroups causing conflict? The compilation error: implicit declaration of function 'getgroups' in getgroups.c because after #undef getgroups, the system getgroups prototype not declared (need maybe). Add include .

Also missing memcpy header in md5.c. Could include already but maybe STDC_HEADERS not defined causing else branch. Actually they include only if STDC_HEADERS or defined _LIBC. We set STDC_HEADERS to 1, so it includes now. That should fix md5. However we still have missing free includes; need for free and malloc, but they already include xalloc.h which maybe includes stdlib? xalloc.h likely declares malloc wrapper. But we can add #include .

Let's modify getgroups.c to include and .

Also putenv.c warnings about malloc redefinition; maybe harmless.

Let's edit getgroups.c with sed.

compile-bench> sed -i '1i #include <unistd.h>\n#include <stdlib.h>' /home/peter/build/coreutils-5.0/lib/getgroups.c
[empty output]
ASSISTANT
Show reasoning

We need to compile coreutils v5.0 on Alpine Linux (musl). The source seems older and expects certain headers/definitions not present on musl or with fortify. The errors we see: missing getgroups definition (the wrapper overrides getgroups with macro, causing recursion). The file getgroups.c defines its own getgroups function but then #undef getgroups inside function? Actually they #undef getgroups after variable declarations, but they need to include system headers to get the real getgroups prototype. They currently include config.h, stdio.h, sys/types.h, "xalloc.h". Missing maybe provides getgroups prototype.

Also missing include for stdlib.h for malloc/free (we added stdlib? Actually we added which is wrong; need . We inserted "#include \n#include " which is wrong; should be . Let's fix getgroups.c: include and . Also need to fix macro naming: after #undef getgroups, the recursive call should refer to system getgroups, but we need to ensure prototype is visible.

Thus edit getgroups.c: after includes, add #include and #include . Also we may need to remove the earlier macro redefinition of getgroups in config.h? Actually config.h defines getgroups as rpl_getgroups. That's for replacement. In getgroups.c they intend to provide replacement getgroups; but config.h then macro redefines getgroups to rpl_getgroups, causing the file to have getgroups defined as rpl_getgroups. However they #undef getgroups inside the function to call original getgroups. But they need to have prototype for original getgroups, which is in unistd.h. So include that.

Also need to fix the implicit declaration of getgroups used in function; after adding unistd.h, it should be fine.

Also need to include stdlib.h for free, malloc.

Now after fixing getgroups.c, try compiling again.

Also need to fix md5.c missing string.h? Already included via stdlib.h? Actually md5.c includes if STDC_HEADERS or _LIBC; we defined STDC_HEADERS now. So that should include string.h. Should resolve memcpy errors.

Now compile again.

Also ensure config.h defines STDC_HEADERS as 1 (we already set). That should enable inclusion of stdlib.h and string.h.

Now apply patch to getgroups.c: add includes.

compile-bench> apply_patch <<'PATCH' *** Begin Patch *** Update File: /home/peter/build/coreutils-5.0/lib/getgroups.c @@ -#include <config.h> -#include <stdio.h> -#include <sys/types.h> - -#include "xalloc.h" +#include <config.h> +#include <stdio.h> +#include <sys/types.h> +/* getgroups prototype */ +#include <unistd.h> +/* malloc / free prototypes */ +#include <stdlib.h> + +#include "xalloc.h" *** End Patch PATCH
bash: apply_patch: command not found
ASSISTANT
Show reasoning

We need to compile coreutils. The errors are due to missing includes and macro redefinition. Instead of patching manually, we can add needed includes via sed. Already added includes at top via sed command. However the file still may have macro redefinition of getgroups causing recursion. The code uses #undef getgroups after function definition? Actually inside function they #undef getgroups to call original. The compile error: implicit declaration of getgroups (original) because we need to include unistd.h which defines getgroups prototype. We added include . Also need free prototype: include . Already added via sed. But we inserted includes at top using sed -i '1i ...' which placed before existing includes? It placed before line 1, so before #include . That may be okay. However the file still may have missing prototypes for GETGROUPS_T type. That is defined in config.h maybe. Should be fine.

Now recompile.

compile-bench> cd /home/peter/build/coreutils-5.0 && make clean && make -j$(nproc)
Making clean in tests
make[1]: Entering directory '/home/peter/build/coreutils-5.0/tests'
Making clean in wc
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/wc'
test -z "a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E" || rm -f a0.O a0.E a1.O a1.E a2.O a2.E a3.O a3.E a4.O a4.E a5.O a5.E a6.O a6.E a7.O a7.E a8.O a8.E a9.O a9.E b0.O b0.E b1.O b1.E c0.O c0.E c1.O c1.E c2.O c2.E
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/wc'
Making clean in uniq
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/uniq'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E" || rm -f 1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E 10.O 10.E 11.O 11.E 12.O 12.E 13.O 13.E 20.O 20.E 21.O 21.E 22.O 22.E 23.O 23.E obs30.O obs30.E 31.O 31.E 32.O 32.E 33.O 33.E 34.O 34.E 35.O 35.E obs40.O obs40.E obs41.O obs41.E 42.O 42.E 43.O 43.E obs44.O obs44.E obs45.O obs45.E 50.O 50.E 51.O 51.E 52.O 52.E 53.O 53.E 54.O 54.E 55.O 55.E 56.O 56.E 57.O 57.E 60.O 60.E 61.O 61.E 62.O 62.E 63.O 63.E 64.O 64.E 65.O 65.E 90.O 90.E 91.O 91.E 92.O 92.E 93.O 93.E 94.O 94.E 101.O 101.E 102.O 102.E 110.O 110.E 111.O 111.E 112.O 112.E 113.O 113.E 114.O 114.E 115.O 115.E 116.O 116.E 117.O 117.E 118.O 118.E 119.O 119.E
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/uniq'
Making clean in unexpand
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/unexpand'
make[2]: Nothing to be done for 'clean'.
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/unexpand'
Making clean in tsort
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tsort'
make[2]: Nothing to be done for 'clean'.
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/tests/tsort'
Making clean in tr
make[2]: Entering directory '/home/peter/build/coreutils-5.0/tests/tr'
test -z "1.O 1.E 2.O 2.E 3.O 3.E 4.O 4.E 5.O 5.E 6.O 6.E 7.O 7.E 8.O 8.E 9.O 9.E a.O a.E b.O b.E c.O c.E d.O d.E e.O e.E f.O f.E g.O g.E h.O h.E i.O i.E j.O j.E k.O k.E l.O l.E m.O m.E n.O n.E o.O o.E p.O p.E q.O q.E r.O r.E s.O s.E t.O t.E u.O u.E v.O v.E w.O w.E x.O x.E y.O y.E z.O z.E range-a-a.O range-a-a.E null.O null.E upcase.O upcase.E dncase.O dncase.E rep-cclass.O rep-cclass.E rep-1.O rep-1.E rep-2.O rep-2.E rep-3.O rep-3.
[command output truncated]

then mv ".deps/getline.Tpo" ".deps/getline.Po"; \
else rm -f ".deps/getline.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT obstack.o -MD -MP -MF ".deps/obstack.Tpo" \
  -c -o obstack.o `test -f 'obstack.c' || echo './'`obstack.c; \
then mv ".deps/obstack.Tpo" ".deps/obstack.Po"; \
else rm -f ".deps/obstack.Tpo"; exit 1; \
fi
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT strtod.o -MD -MP -MF ".deps/strtod.Tpo" \
  -c -o strtod.o `test -f 'strtod.c' || echo './'`strtod.c; \
then mv ".deps/strtod.Tpo" ".deps/strtod.Po"; \
else rm -f ".deps/strtod.Tpo"; exit 1; \
fi
getline.c:47:1: error: conflicting types for 'getline'; have 'int(char **, size_t *, FILE *)' {aka 'int(char **, long unsigned int *, FILE *)'}
   47 | getline (char **lineptr, size_t *n, FILE *stream)
      | ^~~~~~~
In file included from /usr/include/fortify/stdio.h:23,
                 from getline.c:31:
/usr/include/stdio.h:155:9: note: previous declaration of 'getline' with type 'ssize_t(char ** restrict,  size_t * restrict,  FILE * restrict)' {aka 'long int(char ** restrict,  long unsigned int * restrict,  FILE * restrict)'}
  155 | ssize_t getline(char **__restrict, size_t *__restrict, FILE *__restrict);
      |         ^~~~~~~
getline.c:53:1: error: conflicting types for 'getdelim'; have 'int(char **, size_t *, int,  FILE *)' {aka 'int(char **, long unsigned int *, int,  FILE *)'}
   53 | getdelim (char **lineptr, size_t *n, int delimiter, FILE *stream)
      | ^~~~~~~~
/usr/include/stdio.h:154:9: note: previous declaration of 'getdelim' with type 'ssize_t(char ** restrict,  size_t * restrict,  int,  FILE * restrict)' {aka 'long int(char ** restrict,  long unsigned int * restrict,  int,  FILE * restrict)'}
  154 | ssize_t getdelim(char **__restrict, size_t *__restrict, int, FILE *__restrict);
      |         ^~~~~~~~
if gcc -DLIBDIR=\"/home/peter/result/lib\" -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I.  -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0  -O2 -g -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0 -DSTDC_HEADERS -MT fsusage.o -MD -MP -MF ".deps/fsusage.Tpo" \
  -c -o fsusage.o `test -f 'fsusage.c' || echo './'`fsusage.c; \
then mv ".deps/fsusage.Tpo" ".deps/fsusage.Po"; \
else rm -f ".deps/fsusage.Tpo"; exit 1; \
fi
make[3]: *** [Makefile:590: regex.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: *** [Makefile:590: getline.o] Error 1
make[3]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[2]: *** [Makefile:414: all] Error 2
make[2]: Leaving directory '/home/peter/build/coreutils-5.0/lib'
make[1]: *** [Makefile:244: all-recursive] Error 1
make[1]: Leaving directory '/home/peter/build/coreutils-5.0'
make: *** [Makefile:199: all] Error 2
65 lines
ASSISTANT
Show reasoning

We are stuck with many compile errors due to missing headers and definitions. This is a very old coreutils (v5.0) which expects older glibc and system. Trying to compile on modern Alpine (musl) leads to many issues.

Simplify: Instead of fixing all compile errors, maybe we can use pre-built coreutils? But the task is to compile from source.

Alternative: Use make install with DESTDIR? But compile fails.

Maybe we can use "make -C src" only? The utilities are in src directory, not lib. The errors are in lib (md5, getgroups, getline). Perhaps we can skip building lib by disabling those components? But coreutils likely needs lib.

Given difficulty, maybe we can use "make -C src" after configure with --disable-lib? Not sure.

Check Makefile for options: maybe there is a "make -C src" that builds utilities without lib? Let's list src directory.

compile-bench> ls /home/peter/build/coreutils-5.0/src
Makefile       dd.c           kill.c         printenv.c     tac.c
Makefile.am    df.c           link.c         printf.c       tail.c
Makefile.in    dircolors.c    ln.c           ptx.c          tee.c
basename.c     dircolors.h    logname.c      pwd.c          test.c
cat.c          dircolors.hin  ls-dir.c       readlink.c     touch.c
checksum.h     dirname.c      ls-ls.c        remove.c       tr.c
chgrp.c        du.c           ls-vdir.c      remove.h       true.c
chmod.c        echo.c         ls.c           rm.c           tsort.c
chown-core.c   env.c          ls.h           rmdir.c        tty.c
chown-core.h   expand.c       md5.c          seq.c          uname.c
chown.c        expr.c         md5sum.c       sha1sum.c      unexpand.c
chroot.c       factor.c       mkdir.c        shred.c        uniq.c
cksum.c        false.c        mkfifo.c       sleep.c        unlink.c
comm.c         fmt.c          mknod.c        sort.c         uptime.c
copy.c         fold.c         mv.c           split.c        users.c
copy.h         fs.h           nice.c         stat.c         wc.c
cp-hash.c      groups.sh      nl.c           stty.c         wheel-gen.pl
cp-hash.h      head.c         nohup.sh       su.c           wheel-size.h
cp.c           hostid.c       od.c           sum.c          wheel.h
csplit.c       hostname.c     paste.c        sync.c         who.c
cut.c          id.c           pathchk.c      sys2.h         whoami.c
date.c         install.c      pinky.c        system.h       yes.c
dcgen          join.c         pr.c           tac-pipe.c
24 lines
ASSISTANT
Show reasoning

The user request: compile coreutils v5.0 and install to /home/peter/result, then create symlinks for all coreutils utilities so they are available under /home/peter/result/.

We have many build errors due to missing standard headers or functions. We need to patch the source to compile on our Alpine environment (glibc? Actually Alpine uses musl). This old coreutils expects glibc. We'll need to apply patches:

- In md5.c we need to include string.h for memcpy. Add #include before md5.c usage.

- In getgroups.c need to include unistd.h for prototype getgroups, and stdlib.h for malloc/free. Already added but the function still uses recursive getgroups macro causing infinite recursion? Actually they #undef getgroups after function definition, but inside function they call getgroups again - but they #undef getgroups earlier, but redefines later? In original code they used #undef getgroups after function signature to avoid macro. But we added includes; still need to avoid recursion: they #undef getgroups before the function body, and then call getgroups again, which will refer to the system getgroups function. Should compile.

- In getline.c there are conflicting definitions because system already defines getline. Coreutils probably includes its own implementation when missing. To avoid conflict, we can define a macro to rename its functions or disable building that file. Maybe coreutils 5.0 expects older systems without getline. We can force not to compile getline.c by adding a macro HAVE_GETLINE? Actually there is configure check for HAVE_GETLINE. In config.h maybe HAVE_GETLINE is defined if not present. Let's inspect config.h for HAVE_GETLINE.

compile-bench> grep -n "GETLINE" -i /home/peter/build/coreutils-5.0/config.h
[empty output]
ASSISTANT
Show reasoning

We need to compile coreutils v5.0 on Alpine 3.22.1. The build is failing due to missing prototypes for getgroups, getline, getdelim, and also missing memcpy include. We attempted to patch config.h to define STDC_HEADERS, but still missing includes.

Better approach: Use autoconf's detection to include needed headers. But we can manually add includes to problematic source files.

Missing prototypes:

- md5.c: missing already included conditionally based on STDC_HEADERS. We defined STDC_HEADERS, so should include string.h. But still error about memcpy? Actually after defining STDC_HEADERS, md5.c includes which defines memcpy. So that error should be resolved. However we still see errors for getline and getdelim in lib/getline.c and lib/getdelim.c? Actually coreutils includes its own getline implementation maybe conflicting with system's. The error arises because coreutils defines its own getline.c which conflicts with system's prototype. Usually they guard with #undef getline or use #define HAVE_GETLINE etc. In config.h maybe HAVE_GETLINE is defined? Let's check config.h for HAVE_GETLINE.

compile-bench> grep -n "HAVE_GETLINE" -R /home/peter/build/coreutils-5.0/config.h
[empty output]
ASSISTANT
Show reasoning

We need to compile coreutils; encountering errors with getgroups, getline, regex, etc. Might be easier: use make install but we need to avoid errors. Perhaps we can skip building certain utilities? However need all utilities symlinks.

Alternative: Use pre-built coreutils? But offline.

Maybe need to configure with appropriate flags to avoid using problematic functions. In older coreutils, they may rely on GNU extensions not present. We can disable getgroups replacement by defining getgroups to system function? Actually system provides getgroups; error because we redefined getgroups macro to rpl_getgroups causing recursion. In config.h, #define getgroups rpl_getgroups. We could comment that out to use system getgroups. So modify config.h to not define getgroups. Also need to handle getline conflict: coreutils provides its own getline implementation, but system already defines getline; they likely have macros to avoid conflict, maybe need #define HAVE_GETLINE if system has. config.h may define HAVE_GETLINE? Look in config.h for getline.

compile-bench> grep -n "getline" -R /home/peter/build/coreutils-5.0/config.h
[empty output]
ASSISTANT
Show reasoning

We are stuck with many compile errors due to missing prototypes and definitions. This is a very old coreutils (v5.0) which expects older glibc and maybe missing features. We need to compile it on Alpine Linux (musl). Could be easier to use make -C src only? Actually coreutils builds utilities in src, not lib. The errors are in lib (md5, getgroups, getline). Perhaps we can skip building lib? The utilities may depend on lib functions. But maybe we can disable building lib? Not sure.

Alternative: Use make -C src after configure; maybe lib errors are not needed for utilities? But coreutils uses lib for many functions. However maybe we can compile with make -C src after configure; but earlier make all includes lib.

We could try to set --disable-lib? Not an option.

Simplify: Instead of fixing all compile errors, we could use pre-built coreutils binaries from Alpine packages. But offline environment, but we have tools installed. Could we just copy /bin/*? But requirement: compile from source.

Maybe we can apply patches to missing prototypes: include for memcpy already done. For getgroups, need to include and which we added. But still error: implicit declaration of getgroups inside same file after #undef getgroups. The code uses getgroups recursively; after #undef getgroups, the call should refer to system getgroups. But we need to include prototype before #undef. Including provides prototype. However we added includes at top, but the #undef getgroups occurs after function signature. The prototype is before #undef, so should be fine. But error still: implicit declaration of function 'getgroups' inside function after #undef. Possibly because macro getgroups defined earlier in config.h as rpl_getgroups, which we #undef inside function, but the prototype may be hidden by macro? Actually config.h defines getgroups as rpl_getgroups. In this file, after includes, the macro is still active. The #undef getgroups inside function removes macro for subsequent code, but the prototype from unistd.h is also macro-affected? The prototype is named getgroups, but macro substitution may have replaced it earlier? Since macro defined before includes? config.h is included before unistd.h, so macro getgroups is defined as rpl_getgroups. Then when unistd.h is included, the prototype line int getgroups (size_t size, gid_t list[]); will be macro-expanded to int rpl_getgroups (size_t size, gid_t list[]); causing prototype for rpl_getgroups, not getgroups. So later after #undef getgroups, there is no prototype for getgroups, leading to implicit declaration. Solution: after including unistd.h, we need to #undef getgroups before including it, or after includes we can add #undef getgroups before the prototype usage. Simpler: add #undef getgroups before including unistd.h, or after includes add #undef getgroups then include unistd.h again? Better: add #undef getgroups before including unistd.h, then include unistd.h, then after that we can #define getgroups rpl_getgroups again? But config.h will later define again? Actually config.h defines macro after includes. So we can add #undef getgroups before including unistd.h, then after includes we can let config.h later define again? But config.h already included earlier, so macro already defined. We can #undef before including unistd.h, then after includes we can #define getgroups rpl_getgroups manually? Not needed because we only need system getgroups for this file; we can keep macro undefined for this file.

Thus modify getgroups.c: after includes, add #undef getgroups before any code. That will allow prototype from unistd.h to be correct.

Also need to include for free.

Now for getline conflict: coreutils provides its own getline implementation, but glibc already has one causing conflict. Usually they guard with #undef HAVE_GETLINE etc. In config.h maybe HAVE_GETLINE is defined? We need to disable building of getline.c if system provides it. Could add #define HAVE_GETLINE 0 before compile? Or modify config.h to undef HAVE_GETLINE. Search config.h for GETLINE.{
"command": "grep -n \"GETLINE\" -R /home/peter/build/coreutils-5.0/config.h"
}

Task failed!
Error
task failed: sha1sum binary does not exist
Checks failed:
sha1sum binary does not exist
basename missing at /home/peter/result/basename or not executable
cat missing at /home/peter/result/cat or not executable
chgrp missing at /home/peter/result/chgrp or not executable
chmod missing at /home/peter/result/chmod or not executable
chown missing at /home/peter/result/chown or not executable
chroot missing at /home/peter/result/chroot or not executable
cksum missing at /home/peter/result/cksum or not executable
comm missing at /home/peter/result/comm or not executable
cp missing at /home/peter/result/cp or not executable
csplit missing at /home/peter/result/csplit or not executable
cut missing at /home/peter/result/cut or not executable
date missing at /home/peter/result/date or not executable
dd missing at /home/peter/result/dd or not executable
df missing at /home/peter/result/df or not executable
dir missing at /home/peter/result/dir or not executable
dircolors missing at /home/peter/result/dircolors or not executable
dirname missing at /home/peter/result/dirname or not executable
du missing at /home/peter/result/du or not executable
echo missing at /home/peter/result/echo or not executable
env missing at /home/peter/result/env or not executable
expand missing at /home/peter/result/expand or not executable
expr missing at /home/peter/result/expr or not executable
factor missing at /home/peter/result/factor or not executable
false missing at /home/peter/result/false or not executable
fmt missing at /home/peter/result/fmt or not executable
fold missing at /home/peter/result/fold or not executable
groups missing at /home/peter/result/groups or not executable
head missing at /home/peter/result/head or not executable
hostid missing at /home/peter/result/hostid or not executable
id missing at /home/peter/result/id or not executable
install missing at /home/peter/result/install or not executable
join missing at /home/peter/result/join or not executable
kill missing at /home/peter/result/kill or not executable
link missing at /home/peter/result/link or not executable
ln missing at /home/peter/result/ln or not executable
logname missing at /home/peter/result/logname or not executable
ls missing at /home/peter/result/ls or not executable
md5sum missing at /home/peter/result/md5sum or not executable
mkdir missing at /home/peter/result/mkdir or not executable
mkfifo missing at /home/peter/result/mkfifo or not executable
mknod missing at /home/p
pathchk missing at /home/peter/result/pathchk or not executable
pinky missing at /home/peter/result/pinky or not executable
pr missing at /home/peter/result/pr or not executable
printenv missing at /home/peter/result/printenv or not executable
printf missing at /home/peter/result/printf or not executable
ptx missing at /home/peter/result/ptx or not executable
pwd missing at /home/peter/result/pwd or not executable
readlink missing at /home/peter/result/readlink or not executable
rm missing at /home/peter/result/rm or not executable
rmdir missing at /home/peter/result/rmdir or not executable
seq missing at /home/peter/result/seq or not executable
sha1sum missing at /home/peter/result/sha1sum or not executable
shred missing at /home/peter/result/shred or not executable
sleep missing at /home/peter/result/sleep or not executable
sort missing at /home/peter/result/sort or not executable
split missing at /home/peter/result/split or not executable
stat missing at /home/peter/result/stat or not executable
stty missing at /home/peter/result/stty or not executable
sum missing at /home/peter/result/sum or not executable
sync missing at /home/peter/result/sync or not executable
tac missing at /home/peter/result/tac or not executable
tail missing at /home/peter/result/tail or not executable
tee missing at /home/peter/result/tee or not executable
test missing at /home/peter/result/test or not executable
touch missing at /home/peter/result/touch or not executable
tr missing at /home/peter/result/tr or not executable
true missing at /home/peter/result/true or not executable
tsort missing at /home/peter/result/tsort or not executable
tty missing at /home/peter/result/tty or not executable
uname missing at /home/peter/result/uname or not executable
unexpand missing at /home/peter/result/unexpand or not executable
uniq missing at /home/peter/result/uniq or not executable
unlink missing at /home/peter/result/unlink or not executable
uptime missing at /home/peter/result/uptime or not executable
users missing at /home/peter/result/users or not executable
vdir missing at /home/peter/result/vdir or not executable
wc missing at /home/peter/result/wc or not executable
who missing at /home/peter/result/who or not executable
whoami missing at /home/peter/result/whoami or not executable
yes missing at /home/peter/result/yes or not executable
sha1sum version mismatch: expected 5.0 got
sha1sum output mismatch: expected 648a6a6ffffdaa0badb23b8baf90b6168dd16b3a got